Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   STYK_RS10225 Genome accession   NZ_AP024523
Coordinates   2052910..2054091 (+) Length   393 a.a.
NCBI ID   WP_060627321.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2047910..2059091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS10185 (STYK_19580) - 2048970..2049512 (+) 543 WP_001158273.1 TetR/AcrR family transcriptional regulator -
  STYK_RS10200 (STYK_19590) comE 2049755..2050508 (-) 754 Protein_1963 competence system response regulator transcription factor ComE -
  STYK_RS10205 (STYK_19600) comD/comD1 2050505..2051830 (-) 1326 WP_084923904.1 competence system sensor histidine kinase ComD Regulator
  STYK_RS10210 (STYK_19610) comC/comC2 2051843..2051965 (-) 123 WP_060627323.1 competence-stimulating peptide ComC Regulator
  STYK_RS10220 (STYK_19620) rlmH 2052247..2052726 (-) 480 WP_060627322.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STYK_RS10225 (STYK_19630) htrA 2052910..2054091 (+) 1182 WP_060627321.1 S1C family serine protease Regulator
  STYK_RS10230 (STYK_19640) spo0J 2054149..2054907 (+) 759 WP_020902614.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41679.52 Da        Isoelectric Point: 6.1486

>NTDB_id=85781 STYK_RS10225 WP_060627321.1 2052910..2054091(+) (htrA) [Streptococcus toyakuensis strain TP1632]
MKHLKTFYKKGFQLLVVIVISFISGALGSFSINQLTQKSTVSTSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQQISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNINTSDIRRLNIPSNVTSGVV
VRSVQSNMPANGHLEKYDVITKIDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLDKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=85781 STYK_RS10225 WP_060627321.1 2052910..2054091(+) (htrA) [Streptococcus toyakuensis strain TP1632]
ATGAAACATTTAAAAACATTTTACAAAAAAGGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTATTAGTGGAGCCTT
GGGTAGCTTTTCAATAAACCAACTAACTCAAAAAAGTACTGTAAGTACCTCTAACAACAATAGTACTATTACACAGACTG
CCTATAAGAATGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCAGTTATTACTTATTCAGCA
AACAGACAAAATAGCGTATTTGGTAATGATGATACTGACACAGATTCTCAGCAGATCTCTAGTGAAGGATCTGGGGTTAT
TTATAAAAAGAATGATAAAGAAGCTTATATTGTCACCAATAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGTT
TGTCAGATGGAACTAAAGTACCTGGAGAAATCGTCGGAGCTGATACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAATTTGGTGATTCTAGTAAGCTAACCGTAGGAGAAACTGCTATTGCCATTGGTAGCCC
GTTAGGTTCTGAATATGCTAATACTGTCACTCAAGGTATCGTATCTAGTCTTAATCGAAATGTGTCCTTAAAATCTGAAG
ATGGACAAGCCATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGTGGTCCACTAATCAAT
ATTCAAGGACAGGTTATCGGAATTACCTCAAGTAAAATTGCCACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTTGC
AATCCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAGAACGGAAAAGTAACGCGTCCAGCTTTGGGAATTC
AAATGGTCAATCTCTCAAATATTAATACAAGTGATATTAGAAGACTGAATATTCCAAGCAATGTAACATCTGGTGTAGTT
GTTCGTTCTGTGCAGAGCAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTTATTACAAAAATAGATGATAAGGA
GATTGCTTCATCAACAGATTTACAAAGTGCTCTTTACAATCATTCTATCGGAGACACCATTAAGATAACTTACTATCGTA
ACGGTAAAGAAGAAACTACATCTATTAAACTTGACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

99.237

100

0.992

  htrA Streptococcus pneumoniae Rx1

96.947

100

0.969

  htrA Streptococcus pneumoniae D39

96.947

100

0.969

  htrA Streptococcus pneumoniae R6

96.947

100

0.969

  htrA Streptococcus pneumoniae TIGR4

96.947

100

0.969

  htrA Streptococcus gordonii str. Challis substr. CH1

67.003

100

0.677

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment