Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QY917_RS00460 Genome accession   NZ_CP129980
Coordinates   91307..92524 (-) Length   405 a.a.
NCBI ID   WP_012655750.1    Uniprot ID   A0AAX1WYX1
Organism   Diaphorobacter sp. C33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86307..97524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY917_RS00430 (QY917_00430) - 87328..88206 (+) 879 WP_012655745.1 ATP-binding protein -
  QY917_RS00435 (QY917_00435) - 88203..88649 (+) 447 WP_011804248.1 NUDIX domain-containing protein -
  QY917_RS00440 (QY917_00440) - 88718..88948 (-) 231 WP_011804249.1 DNA gyrase inhibitor YacG -
  QY917_RS00445 (QY917_00445) zapD 88955..89710 (-) 756 WP_011804250.1 cell division protein ZapD -
  QY917_RS00450 (QY917_00450) coaE 89801..90394 (-) 594 WP_287805412.1 dephospho-CoA kinase -
  QY917_RS00455 (QY917_00455) - 90426..91307 (-) 882 WP_123675055.1 A24 family peptidase -
  QY917_RS00460 (QY917_00460) pilC 91307..92524 (-) 1218 WP_012655750.1 type II secretion system F family protein Machinery gene
  QY917_RS00465 (QY917_00465) pilB 92544..94277 (-) 1734 WP_012655751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QY917_RS00475 (QY917_00475) - 94614..95597 (-) 984 WP_302078178.1 polyprenyl synthetase family protein -
  QY917_RS00480 (QY917_00480) rplU 95767..96078 (+) 312 WP_012655753.1 50S ribosomal protein L21 -
  QY917_RS00485 (QY917_00485) rpmA 96096..96353 (+) 258 WP_011804286.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44423.44 Da        Isoelectric Point: 9.5091

>NTDB_id=856817 QY917_RS00460 WP_012655750.1 91307..92524(-) (pilC) [Diaphorobacter sp. C33]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVAGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=856817 QY917_RS00460 WP_012655750.1 91307..92524(-) (pilC) [Diaphorobacter sp. C33]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTGCG
CGGCGAAGTACGCGCCGCGGGAGAGAACCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCAACCAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAAAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTTCCACTGCTTCAGGCATTTGATATCGTGGGGCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGCGATGTGGAGACAGGAACGTCCCTGAATGCCGCATTCCGTAAATATCCGATGTACTTCGACAGCCTTTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATTCTGGAAGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTATCCAATCTCAGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACCTCCTTCGGTGCCGACCTGCCCGCCCCCACCTTGTTCG
TGATGGCCATCAGCGAGTTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAAATGCAGCGTTTCATGGACCGTTTCCTGTTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGCGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGCTGGTGCATCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAAATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTATTCCCCTCCATGGTGCTGCAGATGTGTGCGATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGCCGAAGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTGATCGGTGGCATCGTGGTGTCCATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.309

100

0.553
  pilG Neisseria gonorrhoeae MS11

53.535

97.778

0.523
  pilG Neisseria meningitidis 44/76-A

53.283

97.778

0.521
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Legionella pneumophila strain ERS1305867

49.749

98.272

0.489
  pilC Acinetobacter baumannii D1279779

49.874

98.025

0.489
  pilC Vibrio cholerae strain A1552

40.404

97.778

0.395
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Thermus thermophilus HB27

37.845

98.519

0.373