Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QZL40_RS00850 Genome accession   NZ_CP129936
Coordinates   170743..171855 (+) Length   370 a.a.
NCBI ID   WP_025621718.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I13A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 165743..176855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS00830 rsmB 166663..167946 (-) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QZL40_RS00835 fmt 168027..168974 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  QZL40_RS00840 def 169008..169526 (-) 519 WP_005461416.1 peptide deformylase -
  QZL40_RS00845 - 169665..170759 (+) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  QZL40_RS00850 dprA 170743..171855 (+) 1113 WP_025621718.1 DNA-processing protein DprA Machinery gene
  QZL40_RS00855 - 171858..172337 (+) 480 WP_005461440.1 DUF494 family protein -
  QZL40_RS00860 - 172416..172985 (+) 570 WP_021449061.1 type I DNA topoisomerase -
  QZL40_RS00865 - 173055..174182 (-) 1128 WP_031430799.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QZL40_RS00870 purE 174187..174672 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QZL40_RS00875 - 174872..175429 (+) 558 WP_308390485.1 L-threonylcarbamoyladenylate synthase -
  QZL40_RS00880 hemF 175477..176394 (+) 918 WP_069485394.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39899.49 Da        Isoelectric Point: 6.2339

>NTDB_id=856466 QZL40_RS00850 WP_025621718.1 170743..171855(+) (dprA) [Vibrio parahaemolyticus strain I13A]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIQKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=856466 QZL40_RS00850 WP_025621718.1 170743..171855(+) (dprA) [Vibrio parahaemolyticus strain I13A]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCAGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACTTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCAAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

38.462

100

0.405
  dprA Neisseria meningitidis MC58

38.462

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.598

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.34

100

0.381