Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   Q0F95_RS00180 Genome accession   NZ_CP129881
Coordinates   38063..39304 (+) Length   413 a.a.
NCBI ID   WP_061840016.1    Uniprot ID   A0A3G5FG81
Organism   Tetragenococcus halophilus strain H189     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33063..44304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F95_RS00155 (Q0F95_00155) mscL 33079..33543 (-) 465 WP_227869144.1 large conductance mechanosensitive channel protein MscL -
  Q0F95_RS00160 (Q0F95_00160) - 33749..35017 (+) 1269 WP_338475930.1 pitrilysin family protein -
  Q0F95_RS00165 (Q0F95_00165) - 35010..36308 (+) 1299 WP_014123430.1 pitrilysin family protein -
  Q0F95_RS00170 (Q0F95_00170) - 36405..37286 (+) 882 WP_014123431.1 RodZ domain-containing protein -
  Q0F95_RS00175 (Q0F95_00175) pgsA 37342..37923 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q0F95_RS00180 (Q0F95_00180) cinA 38063..39304 (+) 1242 WP_061840016.1 competence/damage-inducible protein A Machinery gene
  Q0F95_RS00185 (Q0F95_00185) recA 39418..40461 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  Q0F95_RS00190 (Q0F95_00190) rny 40720..42276 (+) 1557 WP_061840015.1 ribonuclease Y -
  Q0F95_RS00195 (Q0F95_00195) treR 42323..43039 (-) 717 WP_061840014.1 trehalose operon repressor -
  Q0F95_RS00200 (Q0F95_00200) pgmB 43103..43753 (-) 651 WP_014123437.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45570.70 Da        Isoelectric Point: 4.7511

>NTDB_id=856155 Q0F95_RS00180 WP_061840016.1 38063..39304(+) (cinA) [Tetragenococcus halophilus strain H189]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLAFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGKSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLNQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=856155 Q0F95_RS00180 WP_061840016.1 38063..39304(+) (cinA) [Tetragenococcus halophilus strain H189]
ATGAAAGCAGAAATCATAGCAGTAGGTACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCCTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACCGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTAGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGCATTTTTTGAAAAACGTGA
ACGACCAATGACAGAAAATAATCGTCTACAGGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAAATCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTGCAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGTACCACAGATAAAAATGATGGAAAACAAAAACTGAATCAAATG
GAAGAAGTAATATTAGATCGAGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTCGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGCAGTG
TTTCTGGCGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACATACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G5FG81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.523
  cinA Streptococcus pneumoniae R6

51.306

100

0.523
  cinA Streptococcus pneumoniae D39

51.069

100

0.521
  cinA Streptococcus mutans UA159

50.481

100

0.508
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.855

100

0.441