Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   V8690_RS09490 Genome accession   NZ_CP146350
Coordinates   2013619..2013993 (+) Length   124 a.a.
NCBI ID   WP_338777276.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008619..2018993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS09465 (V8690_09465) sufD 2008745..2009929 (-) 1185 WP_338777269.1 Fe-S cluster assembly protein SufD -
  V8690_RS09470 (V8690_09470) sufB 2009987..2011408 (-) 1422 WP_338777271.1 Fe-S cluster assembly protein SufB -
  V8690_RS09475 (V8690_09475) - 2011405..2012148 (-) 744 WP_338777273.1 ArsR family transcriptional regulator -
  V8690_RS09480 (V8690_09480) - 2012310..2013107 (+) 798 WP_338777274.1 AAC(3) family N-acetyltransferase -
  V8690_RS09485 (V8690_09485) - 2013236..2013619 (+) 384 WP_338777275.1 response regulator -
  V8690_RS09490 (V8690_09490) chiS 2013619..2013993 (+) 375 WP_338777276.1 response regulator Regulator
  V8690_RS09495 (V8690_09495) - 2013990..2015090 (+) 1101 WP_338777278.1 HEAT repeat domain-containing protein -
  V8690_RS09500 (V8690_09500) - 2015087..2016580 (+) 1494 WP_338777280.1 glycosyltransferase family 2 protein -
  V8690_RS09505 (V8690_09505) - 2016577..2018673 (+) 2097 WP_338777282.1 ATP-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13525.50 Da        Isoelectric Point: 4.7040

>NTDB_id=855126 V8690_RS09490 WP_338777276.1 2013619..2013993(+) (chiS) [Streptomyces sp. DG1A-41]
MARVLIADDDADIRDLVAFKLSQSGHQVTPVEDGMSALQVARRQPLDLVLLDIRMPGMSGLDVCRELRAAHDTASLPVIL
ITARSQEGDVELGFAAGADDYIIKPFSPRELSSRVNAVLTRVER

Nucleotide


Download         Length: 375 bp        

>NTDB_id=855126 V8690_RS09490 WP_338777276.1 2013619..2013993(+) (chiS) [Streptomyces sp. DG1A-41]
ATGGCCCGTGTTCTGATAGCCGACGACGACGCCGACATTCGCGACCTCGTGGCGTTCAAGCTGAGTCAGAGCGGTCACCA
GGTCACGCCTGTGGAGGACGGCATGTCGGCGCTGCAAGTGGCGCGTCGGCAGCCGCTGGATCTCGTACTCCTCGACATAC
GGATGCCGGGGATGTCGGGACTGGACGTCTGCCGGGAGCTGCGCGCGGCCCACGACACCGCGTCGCTCCCCGTCATCCTG
ATCACCGCCCGGTCTCAGGAGGGAGACGTCGAACTCGGCTTCGCCGCGGGCGCCGACGACTACATCATCAAGCCCTTCAG
CCCGCGCGAACTGTCCAGCCGGGTCAACGCGGTGCTCACCCGGGTCGAGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

46.61

95.161

0.444
  vicR Streptococcus mutans UA159

39.024

99.194

0.387
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.017

97.581

0.371
  scnR Streptococcus mutans UA159

38.333

96.774

0.371
  pilH Synechocystis sp. PCC 6803

38.655

95.968

0.371
  micA Streptococcus pneumoniae Cp1015

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae Rx1

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae D39

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae R6

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae TIGR4

37.19

97.581

0.363