Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QYC21_RS06410 | Genome accession | NZ_CP129655 |
| Coordinates | 1415428..1415889 (+) | Length | 153 a.a. |
| NCBI ID | WP_056953066.1 | Uniprot ID | - |
| Organism | Lactiplantibacillus pentosus strain LB-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1406748..1447042 | 1415428..1415889 | within | 0 |
Gene organization within MGE regions
Location: 1406748..1447042
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYC21_RS06330 (QYC21_06330) | - | 1406748..1407878 (-) | 1131 | WP_056953056.1 | site-specific integrase | - |
| QYC21_RS06335 (QYC21_06335) | - | 1408584..1409207 (-) | 624 | WP_056953058.1 | hypothetical protein | - |
| QYC21_RS06340 (QYC21_06340) | - | 1409317..1409883 (-) | 567 | WP_056953059.1 | hypothetical protein | - |
| QYC21_RS06345 (QYC21_06345) | - | 1409978..1410409 (-) | 432 | WP_003643876.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QYC21_RS06350 (QYC21_06350) | - | 1410419..1410799 (-) | 381 | WP_050339954.1 | helix-turn-helix transcriptional regulator | - |
| QYC21_RS06355 (QYC21_06355) | - | 1411070..1411252 (+) | 183 | WP_050339955.1 | helix-turn-helix transcriptional regulator | - |
| QYC21_RS06360 (QYC21_06360) | - | 1411265..1412074 (+) | 810 | WP_056953060.1 | ORF6N domain-containing protein | - |
| QYC21_RS06365 (QYC21_06365) | - | 1412071..1412274 (+) | 204 | WP_050339957.1 | hypothetical protein | - |
| QYC21_RS06370 (QYC21_06370) | - | 1412274..1412612 (+) | 339 | WP_050339958.1 | DUF771 domain-containing protein | - |
| QYC21_RS06375 (QYC21_06375) | - | 1412726..1412965 (+) | 240 | WP_056953061.1 | hypothetical protein | - |
| QYC21_RS06380 (QYC21_06380) | - | 1412977..1413177 (+) | 201 | WP_050339960.1 | hypothetical protein | - |
| QYC21_RS06385 (QYC21_06385) | - | 1413189..1413353 (+) | 165 | WP_162985053.1 | hypothetical protein | - |
| QYC21_RS06390 (QYC21_06390) | - | 1413356..1413772 (+) | 417 | WP_056953063.1 | hypothetical protein | - |
| QYC21_RS06395 (QYC21_06395) | - | 1413775..1413945 (+) | 171 | WP_162985054.1 | hypothetical protein | - |
| QYC21_RS06400 (QYC21_06400) | - | 1413945..1414805 (+) | 861 | WP_056953064.1 | DUF1351 domain-containing protein | - |
| QYC21_RS06405 (QYC21_06405) | - | 1414805..1415431 (+) | 627 | WP_056953065.1 | ERF family protein | - |
| QYC21_RS06410 (QYC21_06410) | ssb | 1415428..1415889 (+) | 462 | WP_056953066.1 | single-stranded DNA-binding protein | Machinery gene |
| QYC21_RS06415 (QYC21_06415) | - | 1415904..1416596 (+) | 693 | WP_056953067.1 | putative HNHc nuclease | - |
| QYC21_RS06420 (QYC21_06420) | - | 1416643..1417410 (+) | 768 | WP_225366291.1 | replication protein | - |
| QYC21_RS06425 (QYC21_06425) | - | 1417410..1418195 (+) | 786 | WP_050339966.1 | ATP-binding protein | - |
| QYC21_RS06430 (QYC21_06430) | - | 1418331..1418633 (+) | 303 | WP_056953068.1 | hypothetical protein | - |
| QYC21_RS06435 (QYC21_06435) | - | 1418636..1418947 (+) | 312 | WP_056953070.1 | hypothetical protein | - |
| QYC21_RS06440 (QYC21_06440) | - | 1418951..1419109 (+) | 159 | WP_101809557.1 | hypothetical protein | - |
| QYC21_RS06445 (QYC21_06445) | - | 1419112..1419270 (+) | 159 | WP_162985055.1 | hypothetical protein | - |
| QYC21_RS06450 (QYC21_06450) | - | 1419436..1419870 (+) | 435 | WP_056953071.1 | YopX family protein | - |
| QYC21_RS06455 (QYC21_06455) | - | 1419867..1420352 (+) | 486 | WP_056953072.1 | DUF1642 domain-containing protein | - |
| QYC21_RS06460 (QYC21_06460) | - | 1420483..1420794 (+) | 312 | WP_056953073.1 | hypothetical protein | - |
| QYC21_RS06465 (QYC21_06465) | - | 1420806..1421219 (+) | 414 | WP_056953074.1 | hypothetical protein | - |
| QYC21_RS06470 (QYC21_06470) | - | 1421335..1422324 (+) | 990 | WP_056953075.1 | hypothetical protein | - |
| QYC21_RS06475 (QYC21_06475) | - | 1422405..1423127 (+) | 723 | WP_056953076.1 | hypothetical protein | - |
| QYC21_RS06480 (QYC21_06480) | - | 1423331..1423795 (+) | 465 | WP_056953077.1 | hypothetical protein | - |
| QYC21_RS06485 (QYC21_06485) | - | 1423858..1424094 (+) | 237 | WP_056953079.1 | hypothetical protein | - |
| QYC21_RS06490 (QYC21_06490) | - | 1424078..1424416 (+) | 339 | WP_056953080.1 | HNH endonuclease | - |
| QYC21_RS06495 (QYC21_06495) | - | 1424676..1424918 (+) | 243 | WP_056953082.1 | hypothetical protein | - |
| QYC21_RS06500 (QYC21_06500) | - | 1425029..1425316 (+) | 288 | WP_021730269.1 | P27 family phage terminase small subunit | - |
| QYC21_RS06505 (QYC21_06505) | - | 1425313..1426992 (+) | 1680 | WP_056953083.1 | terminase TerL endonuclease subunit | - |
| QYC21_RS06510 (QYC21_06510) | - | 1427011..1428153 (+) | 1143 | WP_021730267.1 | phage portal protein | - |
| QYC21_RS06515 (QYC21_06515) | - | 1428140..1428862 (+) | 723 | WP_027822442.1 | head maturation protease, ClpP-related | - |
| QYC21_RS06520 (QYC21_06520) | - | 1428885..1430057 (+) | 1173 | WP_021731060.1 | phage major capsid protein | - |
| QYC21_RS06525 (QYC21_06525) | - | 1430196..1430486 (+) | 291 | WP_225366292.1 | hypothetical protein | - |
| QYC21_RS06530 (QYC21_06530) | - | 1430644..1430856 (+) | 213 | WP_237759286.1 | hypothetical protein | - |
| QYC21_RS06535 (QYC21_06535) | - | 1430853..1431260 (+) | 408 | WP_056953085.1 | HK97 gp10 family phage protein | - |
| QYC21_RS06540 (QYC21_06540) | - | 1431257..1431679 (+) | 423 | WP_056953086.1 | hypothetical protein | - |
| QYC21_RS06545 (QYC21_06545) | - | 1431694..1432305 (+) | 612 | WP_021731062.1 | major tail protein | - |
| QYC21_RS06550 (QYC21_06550) | - | 1432399..1432713 (+) | 315 | WP_021731063.1 | hypothetical protein | - |
| QYC21_RS06555 (QYC21_06555) | - | 1432977..1437521 (+) | 4545 | WP_056953087.1 | phage tail tape measure protein | - |
| QYC21_RS06560 (QYC21_06560) | - | 1437525..1438106 (+) | 582 | WP_225366293.1 | hypothetical protein | - |
| QYC21_RS06565 (QYC21_06565) | - | 1438132..1438347 (+) | 216 | WP_225366294.1 | hypothetical protein | - |
| QYC21_RS06570 (QYC21_06570) | - | 1438367..1441408 (+) | 3042 | WP_121243408.1 | phage tail protein | - |
| QYC21_RS06575 (QYC21_06575) | - | 1441415..1442338 (-) | 924 | WP_004271307.1 | IS30 family transposase | - |
| QYC21_RS06580 (QYC21_06580) | - | 1442365..1444311 (+) | 1947 | WP_162985056.1 | gp58-like family protein | - |
| QYC21_RS06585 (QYC21_06585) | - | 1444329..1444820 (+) | 492 | WP_021730684.1 | DUF1617 family protein | - |
| QYC21_RS06590 (QYC21_06590) | - | 1444822..1445268 (+) | 447 | WP_056952363.1 | hypothetical protein | - |
| QYC21_RS06595 (QYC21_06595) | - | 1445273..1445656 (+) | 384 | WP_033609296.1 | hypothetical protein | - |
| QYC21_RS06600 (QYC21_06600) | - | 1445659..1445853 (+) | 195 | WP_021730687.1 | hypothetical protein | - |
| QYC21_RS06605 (QYC21_06605) | - | 1445853..1446137 (+) | 285 | WP_054396940.1 | phage holin family protein | - |
| QYC21_RS06610 (QYC21_06610) | - | 1446137..1447042 (+) | 906 | WP_099722285.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 17254.67 Da Isoelectric Point: 5.9811
>NTDB_id=854776 QYC21_RS06410 WP_056953066.1 1415428..1415889(+) (ssb) [Lactiplantibacillus pentosus strain LB-2]
MINRSVLVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFTNFTHKGSLIGIDGHIQTR
NYENQQGTRIYVTEVVVDNFSLLESRAESEHHQSANSNDHSSNNSNNRKYDNSQNQYGNNGGQIDITDNDLPF
MINRSVLVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFTNFTHKGSLIGIDGHIQTR
NYENQQGTRIYVTEVVVDNFSLLESRAESEHHQSANSNDHSSNNSNNRKYDNSQNQYGNNGGQIDITDNDLPF
Nucleotide
Download Length: 462 bp
>NTDB_id=854776 QYC21_RS06410 WP_056953066.1 1415428..1415889(+) (ssb) [Lactiplantibacillus pentosus strain LB-2]
ATGATTAACCGAAGCGTTTTAGTTGGTAGGCTTACAAGAGACCCAGAATTACGTTATACGAATGGCGGTGCTGCGGTTGC
AACGTTCACGATTGCTGTAAATCGTCAATTTACAAATCAAAATGGAGAACGTGAAGCTGATTTTATTAGCTGTGTCATCT
GGCGGAAGGCTGCTGAAAATTTCACTAATTTCACACATAAAGGATCACTTATTGGAATTGATGGTCACATTCAAACGAGA
AACTATGAAAATCAGCAGGGAACTCGTATTTACGTTACTGAAGTAGTCGTTGATAACTTCTCATTGCTTGAATCACGTGC
TGAATCTGAACATCATCAAAGTGCTAATAGTAATGACCACAGCTCAAACAATAGCAACAATAGAAAATATGATAACAGTC
AAAACCAGTATGGAAATAATGGCGGCCAGATTGATATTACGGACAATGACTTGCCATTTTAA
ATGATTAACCGAAGCGTTTTAGTTGGTAGGCTTACAAGAGACCCAGAATTACGTTATACGAATGGCGGTGCTGCGGTTGC
AACGTTCACGATTGCTGTAAATCGTCAATTTACAAATCAAAATGGAGAACGTGAAGCTGATTTTATTAGCTGTGTCATCT
GGCGGAAGGCTGCTGAAAATTTCACTAATTTCACACATAAAGGATCACTTATTGGAATTGATGGTCACATTCAAACGAGA
AACTATGAAAATCAGCAGGGAACTCGTATTTACGTTACTGAAGTAGTCGTTGATAACTTCTCATTGCTTGAATCACGTGC
TGAATCTGAACATCATCAAAGTGCTAATAGTAATGACCACAGCTCAAACAATAGCAACAATAGAAAATATGATAACAGTC
AAAACCAGTATGGAAATAATGGCGGCCAGATTGATATTACGGACAATGACTTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.353 |
100 |
0.693 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.608 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
69.281 |
0.379 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
52.778 |
70.588 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
52.778 |
70.588 |
0.373 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
51.852 |
70.588 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
51.852 |
70.588 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
51.852 |
70.588 |
0.366 |
| ssbB/cilA | Streptococcus mitis SK321 |
51.852 |
70.588 |
0.366 |