Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   J3989_RS01575 Genome accession   NZ_AP024489
Coordinates   324040..324540 (-) Length   166 a.a.
NCBI ID   WP_207177168.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319040..329540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS01565 (NMNIID777_02860) gnd 319532..320980 (-) 1449 WP_207177166.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  J3989_RS01570 (NMNIID777_02870) lpxC 322042..322965 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  J3989_RS01575 (NMNIID777_02880) pilE 324040..324540 (-) 501 WP_207177168.1 pilin Machinery gene
  J3989_RS01580 (NMNIID777_02890) - 325714..326118 (-) 405 Protein_311 pilin -
  J3989_RS01585 (NMNIID777_02900) pilE 326579..327037 (-) 459 WP_127288172.1 pilin Machinery gene
  J3989_RS01590 (NMNIID777_02910) - 327276..327650 (-) 375 Protein_313 pilin -
  J3989_RS01595 (NMNIID777_02920) - 327760..328194 (-) 435 Protein_314 pilin -
  J3989_RS01600 (NMNIID777_02930) - 328534..328908 (-) 375 Protein_315 pilin -
  J3989_RS01605 (NMNIID777_02940) - 329031..329369 (-) 339 Protein_316 pilin -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17645.14 Da        Isoelectric Point: 9.3587

>NTDB_id=85330 J3989_RS01575 WP_207177168.1 324040..324540(-) (pilE) [Neisseria meningitidis strain NIID777]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPANNSSAGVATSADIK
GKYVEKVEVAKGVITATMLSSGVNKEIQGKKLSLWAKRQNGSVKWFCGQPVTRAGTDDTVAADNTGNKKINTKHLPSTCR
DASSAS

Nucleotide


Download         Length: 501 bp        

>NTDB_id=85330 J3989_RS01575 WP_207177168.1 324040..324540(-) (pilE) [Neisseria meningitidis strain NIID777]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCGAATGGCCCGCCAACAACAGTTCTGCCGGCGTGGCAACCTCCGCCGACATCAAA
GGCAAATATGTTGAGAAAGTTGAAGTCGCAAAAGGCGTCATTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCGGCACCGACGACACCGTCGCCGCCGACAACACCGGCAACAAGAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGC
GACGCTTCATCTGCCAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

82.53

100

0.825
  pilE Neisseria gonorrhoeae MS11

81.818

99.398

0.813
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33

100

0.398
  pilA2 Legionella pneumophila strain ERS1305867

39.873

95.181

0.38
  pilA2 Legionella pneumophila str. Paris

39.241

95.181

0.373
  comP Acinetobacter baylyi ADP1

37.805

98.795

0.373
  pilA Ralstonia pseudosolanacearum GMI1000

36.31

100

0.367

Multiple sequence alignment