Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   J3989_RS01585 Genome accession   NZ_AP024489
Coordinates   326579..327037 (-) Length   152 a.a.
NCBI ID   WP_127288172.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321579..332037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS01570 (NMNIID777_02870) lpxC 322042..322965 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  J3989_RS01575 (NMNIID777_02880) pilE 324040..324540 (-) 501 WP_207177168.1 pilin Machinery gene
  J3989_RS01580 (NMNIID777_02890) - 325714..326118 (-) 405 Protein_311 pilin -
  J3989_RS01585 (NMNIID777_02900) pilE 326579..327037 (-) 459 WP_127288172.1 pilin Machinery gene
  J3989_RS01590 (NMNIID777_02910) - 327276..327650 (-) 375 Protein_313 pilin -
  J3989_RS01595 (NMNIID777_02920) - 327760..328194 (-) 435 Protein_314 pilin -
  J3989_RS01600 (NMNIID777_02930) - 328534..328908 (-) 375 Protein_315 pilin -
  J3989_RS01605 (NMNIID777_02940) - 329031..329369 (-) 339 Protein_316 pilin -
  J3989_RS01610 (NMNIID777_02950) - 329846..330250 (-) 405 Protein_317 pilin -
  J3989_RS01615 (NMNIID777_02960) - 330594..330809 (-) 216 Protein_318 pilin -
  J3989_RS01620 (NMNIID777_02970) - 330838..331167 (-) 330 WP_002240914.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  J3989_RS10760 (NMNIID777_02980) - 331338..331565 (-) 228 WP_101132400.1 DUF2061 domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16447.40 Da        Isoelectric Point: 8.2541

>NTDB_id=85331 J3989_RS01585 WP_127288172.1 326579..327037(-) (pilE) [Neisseria meningitidis strain NIID777]
MPTNLDSRLRGNDESILLAEGQKSAVTEYYLNHGKWPGDNSDAGVASSADIKGKYVQKVEVNNGVVTATMLSSGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVKRADKATDDAVNKATGNNEIDTKHLPSTCRDASSVVCIETPPTAFYKNT

Nucleotide


Download         Length: 459 bp        

>NTDB_id=85331 J3989_RS01585 WP_127288172.1 326579..327037(-) (pilE) [Neisseria meningitidis strain NIID777]
GTGCCGACAAACCTGGATTCCCGCCTGCGCGGGAATGACGAATCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCAAATGGCCCGGCGACAACAGTGATGCCGGCGTGGCATCCTCCGCCGACATCAAAGGCA
AATATGTTCAGAAAGTTGAAGTCAACAACGGCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGA
CAAAGCCACCGACGACGCCGTCAACAAAGCCACCGGCAACAACGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCG
ACGCTTCATCTGTCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.464

90.789

0.658
  pilE Neisseria gonorrhoeae MS11

70.504

91.447

0.645

Multiple sequence alignment