Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QYE84_RS06870 Genome accession   NZ_CP129369
Coordinates   1398839..1399159 (+) Length   106 a.a.
NCBI ID   WP_011275670.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393839..1404159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS06840 - 1394626..1394829 (+) 204 WP_037536577.1 YqgQ family protein -
  QYE84_RS06845 - 1394826..1395812 (+) 987 WP_037536575.1 ROK family glucokinase -
  QYE84_RS06850 - 1395812..1396135 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  QYE84_RS06855 - 1396137..1396763 (+) 627 WP_053018268.1 MBL fold metallo-hydrolase -
  QYE84_RS06860 comGA 1396815..1397789 (+) 975 WP_053018269.1 competence type IV pilus ATPase ComGA Machinery gene
  QYE84_RS06865 comGB 1397761..1398825 (+) 1065 WP_053018270.1 competence type IV pilus assembly protein ComGB -
  QYE84_RS06870 comGC 1398839..1399159 (+) 321 WP_011275670.1 competence type IV pilus major pilin ComGC Machinery gene
  QYE84_RS06875 comGD 1399149..1399592 (+) 444 WP_016931110.1 competence type IV pilus minor pilin ComGD -
  QYE84_RS06880 - 1399573..1399872 (+) 300 WP_053018271.1 hypothetical protein -
  QYE84_RS06885 - 1400441..1400959 (+) 519 WP_053018273.1 shikimate kinase -
  QYE84_RS06890 gcvT 1401148..1402239 (+) 1092 WP_301401154.1 glycine cleavage system aminomethyltransferase GcvT -
  QYE84_RS06895 gcvPA 1402256..1403608 (+) 1353 WP_301401157.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11782.84 Da        Isoelectric Point: 8.5328

>NTDB_id=852861 QYE84_RS06870 WP_011275670.1 1398839..1399159(+) (comGC) [Staphylococcus haemolyticus strain CJFE-402M]
MKNHFENLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=852861 QYE84_RS06870 WP_011275670.1 1398839..1399159(+) (comGC) [Staphylococcus haemolyticus strain CJFE-402M]
ATGAAGAATCACTTTGAAAATTTAAAAAAGTTAAAAGCTTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACTCCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

83.333

96.226

0.802
  comGC Staphylococcus aureus MW2

83.333

96.226

0.802
  comYC Streptococcus gordonii str. Challis substr. CH1

45.192

98.113

0.443
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368