Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYR55_RS00935 Genome accession   NZ_CP129328
Coordinates   143954..144349 (+) Length   131 a.a.
NCBI ID   WP_367562635.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 138954..149349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS00895 (QYR55_00895) - 139039..139491 (+) 453 WP_003098820.1 hypothetical protein -
  QYR55_RS00900 (QYR55_00900) - 139501..140157 (+) 657 WP_367562312.1 type II CAAX endopeptidase family protein -
  QYR55_RS00905 (QYR55_00905) proC 140191..140961 (-) 771 WP_367562634.1 pyrroline-5-carboxylate reductase -
  QYR55_RS00910 (QYR55_00910) pepA 140985..142052 (-) 1068 WP_367562313.1 glutamyl aminopeptidase -
  QYR55_RS00915 (QYR55_00915) - 142193..142477 (+) 285 WP_367561730.1 DUF4651 domain-containing protein -
  QYR55_RS00920 (QYR55_00920) - 142474..142791 (+) 318 WP_003098830.1 thioredoxin family protein -
  QYR55_RS00925 (QYR55_00925) ytpR 142808..143434 (+) 627 WP_003098832.1 YtpR family tRNA-binding protein -
  QYR55_RS00930 (QYR55_00930) - 143472..143882 (-) 411 WP_003098834.1 GNAT family N-acetyltransferase -
  QYR55_RS00935 (QYR55_00935) ssbA 143954..144349 (+) 396 WP_367562635.1 single-stranded DNA-binding protein Machinery gene
  QYR55_RS00940 (QYR55_00940) - 144823..145786 (+) 964 Protein_138 ABC transporter substrate-binding protein -
  QYR55_RS00945 (QYR55_00945) - 145800..146762 (+) 963 WP_367561732.1 ABC transporter substrate-binding protein -
  QYR55_RS00950 (QYR55_00950) - 146772..147656 (+) 885 WP_367561733.1 ABC transporter permease -
  QYR55_RS00955 (QYR55_00955) - 147665..148468 (+) 804 WP_367562636.1 ABC transporter ATP-binding protein -
  QYR55_RS00960 (QYR55_00960) - 148529..149173 (-) 645 WP_367562637.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15031.39 Da        Isoelectric Point: 5.9574

>NTDB_id=852248 QYR55_RS00935 WP_367562635.1 143954..144349(+) (ssbA) [Streptococcus iniae strain Si 1-19]
MYNKVVMIGRLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGGKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852248 QYR55_RS00935 WP_367562635.1 143954..144349(+) (ssbA) [Streptococcus iniae strain Si 1-19]
ATGTATAATAAAGTCGTAATGATTGGTCGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCGGCAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae D39

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae R6

67.176

100

0.672
  ssbB/cilA Streptococcus mitis NCTC 12261

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae TIGR4

66.412

100

0.664
  ssbB/cilA Streptococcus mitis SK321

66.412

100

0.664
  ssbB Streptococcus sobrinus strain NIDR 6715-7

66.412

100

0.664
  ssbB Lactococcus lactis subsp. cremoris KW2

57.143

85.496

0.489