Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYR57_RS00660 Genome accession   NZ_CP129327
Coordinates   104412..104807 (+) Length   131 a.a.
NCBI ID   WP_367561731.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 4-21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 99412..109807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS00620 (QYR57_00620) - 99497..99949 (+) 453 WP_003098820.1 hypothetical protein -
  QYR57_RS00625 (QYR57_00625) - 99959..100615 (+) 657 WP_367561728.1 type II CAAX endopeptidase family protein -
  QYR57_RS00630 (QYR57_00630) proC 100649..101419 (-) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  QYR57_RS00635 (QYR57_00635) pepA 101443..102510 (-) 1068 WP_367561729.1 glutamyl aminopeptidase -
  QYR57_RS00640 (QYR57_00640) - 102651..102935 (+) 285 WP_367561730.1 DUF4651 domain-containing protein -
  QYR57_RS00645 (QYR57_00645) - 102932..103249 (+) 318 WP_003098830.1 thioredoxin family protein -
  QYR57_RS00650 (QYR57_00650) ytpR 103266..103892 (+) 627 WP_003098832.1 YtpR family tRNA-binding protein -
  QYR57_RS00655 (QYR57_00655) - 103930..104340 (-) 411 WP_003098834.1 GNAT family N-acetyltransferase -
  QYR57_RS00660 (QYR57_00660) ssbA 104412..104807 (+) 396 WP_367561731.1 single-stranded DNA-binding protein Machinery gene
  QYR57_RS00665 (QYR57_00665) - 105281..106243 (+) 963 WP_003098839.1 ABC transporter substrate-binding protein -
  QYR57_RS00670 (QYR57_00670) - 106257..107219 (+) 963 WP_367561732.1 ABC transporter substrate-binding protein -
  QYR57_RS00675 (QYR57_00675) - 107229..108113 (+) 885 WP_367561733.1 ABC transporter permease -
  QYR57_RS00680 (QYR57_00680) - 108122..108925 (+) 804 WP_367561734.1 ATP-binding cassette domain-containing protein -
  QYR57_RS00685 (QYR57_00685) - 108986..109631 (-) 646 Protein_119 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15020.31 Da        Isoelectric Point: 5.0352

>NTDB_id=852198 QYR57_RS00660 WP_367561731.1 104412..104807(+) (ssbA) [Streptococcus iniae strain Si 4-21]
MYNKVVMIGSLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGDKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852198 QYR57_RS00660 WP_367561731.1 104412..104807(+) (ssbA) [Streptococcus iniae strain Si 4-21]
ATGTATAATAAAGTCGTAATGATTGGTAGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCGACAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae D39

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae R6

66.412

100

0.664
  ssbB/cilA Streptococcus mitis NCTC 12261

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae TIGR4

65.649

100

0.656
  ssbB/cilA Streptococcus mitis SK321

65.649

100

0.656
  ssbB Streptococcus sobrinus strain NIDR 6715-7

64.885

100

0.649
  ssbB Lactococcus lactis subsp. cremoris KW2

56.25

85.496

0.481