Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QYR59_RS00930 Genome accession   NZ_CP129326
Coordinates   138484..138879 (+) Length   131 a.a.
NCBI ID   WP_367561731.1    Uniprot ID   -
Organism   Streptococcus iniae strain P3SAB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133484..143879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR59_RS00890 (QYR59_00890) - 133569..134021 (+) 453 WP_003098820.1 hypothetical protein -
  QYR59_RS00895 (QYR59_00895) - 134031..134687 (+) 657 WP_367562312.1 type II CAAX endopeptidase family protein -
  QYR59_RS00900 (QYR59_00900) proC 134721..135491 (-) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  QYR59_RS00905 (QYR59_00905) pepA 135515..136582 (-) 1068 WP_367562313.1 glutamyl aminopeptidase -
  QYR59_RS00910 (QYR59_00910) - 136723..137007 (+) 285 WP_367561730.1 DUF4651 domain-containing protein -
  QYR59_RS00915 (QYR59_00915) - 137004..137321 (+) 318 WP_003098830.1 thioredoxin family protein -
  QYR59_RS00920 (QYR59_00920) ytpR 137338..137964 (+) 627 WP_003098832.1 YtpR family tRNA-binding protein -
  QYR59_RS00925 (QYR59_00925) - 138002..138412 (-) 411 WP_003098834.1 GNAT family N-acetyltransferase -
  QYR59_RS00930 (QYR59_00930) ssbA 138484..138879 (+) 396 WP_367561731.1 single-stranded DNA-binding protein Machinery gene
  QYR59_RS00935 (QYR59_00935) - 139353..140316 (+) 964 Protein_136 ABC transporter substrate-binding protein -
  QYR59_RS00940 (QYR59_00940) - 140330..141292 (+) 963 WP_367562314.1 ABC transporter substrate-binding protein -
  QYR59_RS00945 (QYR59_00945) - 141302..142186 (+) 885 WP_367561733.1 ABC transporter permease -
  QYR59_RS00950 (QYR59_00950) - 142195..142998 (+) 804 WP_367562315.1 ABC transporter ATP-binding protein -
  QYR59_RS00955 (QYR59_00955) - 143059..143704 (-) 646 Protein_140 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15020.31 Da        Isoelectric Point: 5.0352

>NTDB_id=852152 QYR59_RS00930 WP_367561731.1 138484..138879(+) (ssbA) [Streptococcus iniae strain P3SAB]
MYNKVVMIGSLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGDKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852152 QYR59_RS00930 WP_367561731.1 138484..138879(+) (ssbA) [Streptococcus iniae strain P3SAB]
ATGTATAATAAAGTCGTAATGATTGGTAGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCGACAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae D39

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae R6

66.412

100

0.664
  ssbB/cilA Streptococcus mitis NCTC 12261

66.412

100

0.664
  ssbB/cilA Streptococcus pneumoniae TIGR4

65.649

100

0.656
  ssbB/cilA Streptococcus mitis SK321

65.649

100

0.656
  ssbB Streptococcus sobrinus strain NIDR 6715-7

64.885

100

0.649
  ssbB Lactococcus lactis subsp. cremoris KW2

56.25

85.496

0.481