Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLUC029_RS06775 Genome accession   NZ_CP129163
Coordinates   1332883..1333209 (+) Length   108 a.a.
NCBI ID   WP_235133130.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC029     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327883..1338209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS06750 (LLUC029_06770) - 1328955..1329455 (-) 501 WP_032951093.1 VanZ family protein -
  LLUC029_RS06755 (LLUC029_06775) - 1329497..1330132 (-) 636 WP_011676097.1 YigZ family protein -
  LLUC029_RS06760 (LLUC029_06780) comFA 1330189..1330974 (+) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  LLUC029_RS06765 (LLUC029_06785) - 1331072..1332007 (-) 936 WP_031559015.1 IS30 family transposase -
  LLUC029_RS06770 (LLUC029_06790) comFA 1332143..1332559 (+) 417 WP_257589739.1 helicase-related protein Machinery gene
  LLUC029_RS06775 comFC 1332883..1333209 (+) 327 WP_235133130.1 ComF family protein Machinery gene
  LLUC029_RS06780 (LLUC029_06800) - 1333267..1333845 (-) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLUC029_RS06785 (LLUC029_06805) - 1333862..1334317 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLUC029_RS06790 (LLUC029_06810) ybeY 1334301..1334789 (-) 489 WP_032951096.1 rRNA maturation RNase YbeY -
  LLUC029_RS06795 (LLUC029_06815) - 1334880..1335374 (-) 495 WP_011676092.1 NUDIX hydrolase -
  LLUC029_RS06800 (LLUC029_06820) - 1335444..1336412 (-) 969 WP_021165232.1 PhoH family protein -
  LLUC029_RS06805 (LLUC029_06825) - 1336486..1338018 (-) 1533 WP_015082368.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12393.47 Da        Isoelectric Point: 10.3362

>NTDB_id=851347 LLUC029_RS06775 WP_235133130.1 1332883..1333209(+) (comFC) [Lactococcus cremoris strain UC029]
MSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNREGRLSTSNPFKLKEGEKIPQKIILIDDIY
TTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 327 bp        

>NTDB_id=851347 LLUC029_RS06775 WP_235133130.1 1332883..1333209(+) (comFC) [Lactococcus cremoris strain UC029]
TTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAACAGC
TTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAGGGAC
GTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATATTTAT
ACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCACTCTG
CCGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(53-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.222

100

0.972
  comFC/cflB Streptococcus mitis NCTC 12261

51.852

100

0.519
  comFC/cflB Streptococcus pneumoniae Rx1

49.074

100

0.491
  comFC/cflB Streptococcus pneumoniae D39

49.074

100

0.491
  comFC/cflB Streptococcus pneumoniae R6

49.074

100

0.491
  comFC/cflB Streptococcus pneumoniae TIGR4

49.074

100

0.491
  comFC/cflB Streptococcus mitis SK321

48.148

100

0.481
  comFC Latilactobacillus sakei subsp. sakei 23K

40.566

98.148

0.398
  comFC Bacillus subtilis subsp. subtilis str. 168

37.615

100

0.38