Detailed information NTG0851345

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LLUC029_RS06760
• Genome accession: NZ_CP129163
• Coordinates: 1330189..1330974 (+)
• Length: 261 a.a.
• NCBI ID: WP_021214114.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain UC029
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1325189..1335974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUC029_RS06735 (LLUC029_06755)	-	1326110..1326757 (-)	648	WP_011676100.1	GIY-YIG nuclease family protein	-
LLUC029_RS06740 (LLUC029_06760)	-	1326994..1327761 (-)	768	WP_011676099.1	5'-nucleotidase	-
LLUC029_RS06745 (LLUC029_06765)	-	1327870..1328889 (-)	1020	WP_032951092.1	DUF475 domain-containing protein	-
LLUC029_RS06750 (LLUC029_06770)	-	1328955..1329455 (-)	501	WP_032951093.1	VanZ family protein	-
LLUC029_RS06755 (LLUC029_06775)	-	1329497..1330132 (-)	636	WP_011676097.1	YigZ family protein	-
LLUC029_RS06760 (LLUC029_06780)	comFA	1330189..1330974 (+)	786	WP_021214114.1	DEAD/DEAH box helicase family protein	Machinery gene
LLUC029_RS06765 (LLUC029_06785)	-	1331072..1332007 (-)	936	WP_031559015.1	IS30 family transposase	-
LLUC029_RS06770 (LLUC029_06790)	comFA	1332143..1332559 (+)	417	WP_257589739.1	helicase-related protein	Machinery gene
LLUC029_RS06775	comFC	1332883..1333209 (+)	327	WP_235133130.1	ComF family protein	Machinery gene
LLUC029_RS06780 (LLUC029_06800)	-	1333267..1333845 (-)	579	WP_011676095.1	nucleotidyltransferase family protein	-
LLUC029_RS06785 (LLUC029_06805)	-	1333862..1334317 (-)	456	WP_011676094.1	diacylglycerol kinase family protein	-
LLUC029_RS06790 (LLUC029_06810)	ybeY	1334301..1334789 (-)	489	WP_032951096.1	rRNA maturation RNase YbeY	-
LLUC029_RS06795 (LLUC029_06815)	-	1334880..1335374 (-)	495	WP_011676092.1	NUDIX hydrolase	-

Sequence

Protein

• Length: 261 a.a.
• Molecular weight: 29919.55 Da
• Isoelectric Point: 7.8588

>NTDB_id=851345 LLUC029_RS06760 WP_021214114.1 1330189..1330974(+) (comFA) [Lactococcus cremoris strain UC029]
MNLILENLLGRLLLEKDISAFYNFTDQVNNENKLIKICAMTSVNANKVRCNRCGTIHIKTNVKLPIGAFFCPTCLELGRV
RSDEYFYHLPQQDFSEKTYLRWTGKLTENQEKISNALCQQITNNQKRLVQAVTGAGKTEMIYQLIEQILSHGGSVGLASP
RIDVCIELHQRLSRDFTCQIPLLYHEGDSYFRSPLVVMTSHQLLRFKEAFDLLIIDEVDAFPFRDNDMLYFALENAKKIN
GNLLYLTATSTDKLDKQIKKA

Nucleotide

• Length: 786 bp

>NTDB_id=851345 LLUC029_RS06760 WP_021214114.1 1330189..1330974(+) (comFA) [Lactococcus cremoris strain UC029]
ATGAACTTAATTTTAGAAAATCTCCTTGGGCGTCTTTTACTAGAAAAAGATATTTCAGCTTTTTATAATTTTACTGACCA
AGTTAACAATGAAAACAAATTAATTAAAATTTGTGCAATGACATCTGTCAATGCTAATAAAGTAAGATGTAATCGATGTG
GCACGATTCATATAAAAACCAATGTTAAACTTCCGATTGGTGCTTTTTTCTGTCCAACATGTCTTGAACTTGGTCGTGTC
CGCTCAGATGAATATTTCTATCATCTCCCTCAACAAGACTTTTCAGAAAAAACTTATTTACGTTGGACAGGAAAATTAAC
AGAAAATCAAGAAAAAATTTCTAACGCTCTCTGTCAGCAAATTACTAATAATCAAAAACGACTTGTTCAAGCCGTTACTG
GTGCTGGTAAAACAGAAATGATATATCAGCTTATTGAACAAATTCTTAGCCATGGGGGTTCGGTCGGTTTAGCCAGCCCA
AGAATTGATGTATGCATTGAGCTTCATCAACGTTTATCACGTGATTTCACTTGTCAAATTCCCCTTTTGTATCATGAGGG
AGATTCTTATTTTCGTTCGCCTTTGGTCGTTATGACCAGTCACCAACTTTTACGTTTCAAAGAGGCCTTTGATTTGCTTA
TCATCGATGAAGTCGATGCCTTTCCTTTTAGAGATAATGACATGCTTTATTTCGCTCTTGAAAATGCTAAAAAAATTAAT
GGAAACTTGCTCTACTTAACCGCTACATCTACTGACAAATTAGACAAACAGATAAAAAAAGCATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (105-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	97.308	99.617	0.969
comFA/cflA	Streptococcus mitis SK321	49.802	96.935	0.483
comFA/cflA	Streptococcus pneumoniae D39	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae Rx1	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae R6	49.012	96.935	0.475
comFA/cflA	Streptococcus pneumoniae TIGR4	49.012	96.935	0.475
comFA/cflA	Streptococcus mitis NCTC 12261	48.617	96.935	0.471
comFA	Bacillus subtilis subsp. subtilis str. 168	37.453	100	0.383