Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LLUC029_RS06770 Genome accession   NZ_CP129163
Coordinates   1332143..1332559 (+) Length   138 a.a.
NCBI ID   WP_257589739.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC029     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327143..1337559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS06745 (LLUC029_06765) - 1327870..1328889 (-) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLUC029_RS06750 (LLUC029_06770) - 1328955..1329455 (-) 501 WP_032951093.1 VanZ family protein -
  LLUC029_RS06755 (LLUC029_06775) - 1329497..1330132 (-) 636 WP_011676097.1 YigZ family protein -
  LLUC029_RS06760 (LLUC029_06780) comFA 1330189..1330974 (+) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  LLUC029_RS06765 (LLUC029_06785) - 1331072..1332007 (-) 936 WP_031559015.1 IS30 family transposase -
  LLUC029_RS06770 (LLUC029_06790) comFA 1332143..1332559 (+) 417 WP_257589739.1 helicase-related protein Machinery gene
  LLUC029_RS06775 comFC 1332883..1333209 (+) 327 WP_235133130.1 ComF family protein Machinery gene
  LLUC029_RS06780 (LLUC029_06800) - 1333267..1333845 (-) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLUC029_RS06785 (LLUC029_06805) - 1333862..1334317 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLUC029_RS06790 (LLUC029_06810) ybeY 1334301..1334789 (-) 489 WP_032951096.1 rRNA maturation RNase YbeY -
  LLUC029_RS06795 (LLUC029_06815) - 1334880..1335374 (-) 495 WP_011676092.1 NUDIX hydrolase -
  LLUC029_RS06800 (LLUC029_06820) - 1335444..1336412 (-) 969 WP_021165232.1 PhoH family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15494.15 Da        Isoelectric Point: 10.8911

>NTDB_id=851346 LLUC029_RS06770 WP_257589739.1 1332143..1332559(+) (comFA) [Lactococcus cremoris strain UC029]
MEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKEKMAFVASTTKSKKTIVEAFRKKQVSILITTSILERGVTFSSIDVFV
INSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKEIKKMNRLGGF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=851346 LLUC029_RS06770 WP_257589739.1 1332143..1332559(+) (comFA) [Lactococcus cremoris strain UC029]
ATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTTCGTTGCCGAAATCGACTTTGGTCAAGACTTTGCCAAAAATTT
ACAAGAAAAATTTCCAAAAGAAAAAATGGCTTTTGTCGCTTCAACAACTAAAAGCAAAAAAACGATTGTCGAAGCTTTTC
GCAAGAAACAAGTTTCGATTTTAATTACGACTTCTATTCTTGAACGAGGCGTAACTTTTTCTTCGATTGATGTTTTTGTC
ATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCTCATTCAAATGGCCGGACGAGTGGGACGCGACTCTAAACGTCC
AACAGGTTTAGTTAGTTTTTTTCACTCTGGAAAATCTTTAGCCATGTGTCAAGCTCAGAAAGAAATTAAAAAAATGAACC
GACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(4-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

98.551

100

0.986
  comFA/cflA Streptococcus pneumoniae TIGR4

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae Rx1

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae D39

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae R6

52.555

99.275

0.522
  comFA/cflA Streptococcus mitis SK321

51.825

99.275

0.514
  comFA/cflA Streptococcus mitis NCTC 12261

51.825

99.275

0.514
  comFA Bacillus subtilis subsp. subtilis str. 168

39.85

96.377

0.384