Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LC048_RS12505 Genome accession   NZ_CP129019
Coordinates   2405249..2406499 (-) Length   416 a.a.
NCBI ID   WP_226600680.1    Uniprot ID   -
Organism   Mesobacillus subterraneus strain KcN21-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2400249..2411499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC048_RS12490 (LC048_12490) - 2401012..2401809 (-) 798 WP_226600682.1 TIGR00282 family metallophosphoesterase -
  LC048_RS12495 (LC048_12495) rny 2402032..2403594 (-) 1563 WP_102262253.1 ribonuclease Y -
  LC048_RS12500 (LC048_12500) recA 2403924..2404965 (-) 1042 Protein_2492 recombinase RecA -
  LC048_RS12505 (LC048_12505) cinA 2405249..2406499 (-) 1251 WP_226600680.1 competence/damage-inducible protein A Machinery gene
  LC048_RS12510 (LC048_12510) pgsA 2406524..2407107 (-) 584 Protein_2494 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LC048_RS12515 (LC048_12515) - 2407350..2408225 (-) 876 WP_226600678.1 RodZ family helix-turn-helix domain-containing protein -
  LC048_RS12520 (LC048_12520) - 2408246..2409037 (-) 792 WP_226600677.1 DUF3388 domain-containing protein -
  LC048_RS12525 (LC048_12525) - 2409247..2409504 (-) 258 WP_226600676.1 DUF3243 domain-containing protein -
  LC048_RS12530 (LC048_12530) ymfI 2409605..2410327 (-) 723 WP_226600675.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45117.41 Da        Isoelectric Point: 4.7309

>NTDB_id=850594 LC048_RS12505 WP_226600680.1 2405249..2406499(-) (cinA) [Mesobacillus subterraneus strain KcN21-5]
MNAEIIAVGSELLLGQIVNTNARFLSRQLADLGINVFYHTVVGDNPDRLKNAMGIARERADLIIFTGGLGPTKDDLTKDT
IAGQLGKQLVLDEEAMRSIELYFEKTNRIMTENNRKQALVIEGSAVLKNEHGMAPGMFLATADNKFMLLPGPPSEMEPMF
LKYGQPALEGVTGNQSKIESRVLRFFGIGEAALESEIEDLIDQQSNPTIAPLAGDGEVTLRLTAREDSKHTAQALIDRVE
AEIMDRVGEFFYGYDETSLMIELSKLLKNKNFTLGAAESLTGGMFQQDLTSISGASSLFNGGFVCFSNEAKIDLVKVNPE
TIERYGAVSAECAAELAMNAALLTNSDIGISFTGVAGPESLEGHPPGTVYIGLHVKDQQVYSEKLSLSGSRNAIRKRAVK
FGCQIIINSLSGTRKQ

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=850594 LC048_RS12505 WP_226600680.1 2405249..2406499(-) (cinA) [Mesobacillus subterraneus strain KcN21-5]
ATGAATGCCGAAATCATTGCTGTGGGATCAGAATTGCTCCTTGGGCAAATCGTCAATACAAACGCCAGATTCCTTTCCAG
GCAGCTTGCCGATCTGGGAATCAATGTTTTCTACCATACGGTCGTTGGGGATAATCCTGATCGTTTGAAGAATGCGATGG
GAATAGCCAGGGAGCGCGCTGACCTGATTATCTTCACTGGCGGACTGGGTCCAACAAAAGATGATCTGACAAAAGATACA
ATTGCTGGGCAGCTTGGAAAGCAGCTTGTTCTTGATGAGGAAGCGATGAGGTCCATTGAATTGTATTTTGAAAAAACGAA
CAGGATAATGACTGAAAATAATAGGAAACAAGCTCTCGTCATCGAGGGGTCAGCCGTCCTGAAAAATGAACATGGCATGG
CTCCGGGGATGTTCCTGGCAACAGCAGACAACAAGTTCATGCTTTTGCCAGGACCACCATCCGAGATGGAACCAATGTTT
TTGAAATATGGCCAGCCTGCTTTAGAAGGCGTGACCGGCAATCAGTCTAAAATTGAATCGAGGGTCCTGCGTTTCTTTGG
AATCGGCGAGGCAGCATTAGAATCGGAAATAGAAGATTTGATTGACCAGCAGAGCAATCCAACCATCGCCCCTTTGGCTG
GGGACGGTGAAGTTACACTGAGGCTTACGGCCAGGGAAGATTCCAAACACACAGCACAAGCATTGATTGATAGAGTGGAA
GCGGAAATCATGGACAGAGTCGGTGAGTTTTTTTATGGTTACGACGAAACTTCGTTAATGATCGAGCTTTCGAAACTATT
GAAAAATAAAAACTTCACGTTAGGAGCTGCTGAAAGCTTGACAGGCGGAATGTTTCAGCAGGATTTGACTTCAATCTCCG
GTGCAAGCAGTCTTTTCAATGGCGGCTTTGTTTGTTTTTCAAACGAAGCCAAAATAGATCTTGTAAAGGTTAATCCGGAA
ACAATCGAGAGGTATGGGGCTGTTAGCGCTGAATGTGCAGCAGAGCTAGCAATGAATGCTGCACTCCTTACCAACTCTGA
CATCGGCATCAGCTTTACTGGAGTGGCTGGTCCTGAGAGCCTGGAAGGGCATCCGCCAGGGACCGTTTATATCGGGCTCC
ACGTAAAAGACCAACAAGTTTATTCAGAAAAACTTAGCCTGAGCGGCTCCCGCAATGCTATCAGGAAAAGGGCTGTAAAG
TTCGGCTGCCAGATTATTATTAATAGTTTATCAGGAACACGGAAGCAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.902

98.317

0.589
  cinA Streptococcus pneumoniae TIGR4

46.905

100

0.474
  cinA Streptococcus pneumoniae Rx1

46.667

100

0.471
  cinA Streptococcus pneumoniae R6

46.667

100

0.471
  cinA Streptococcus pneumoniae D39

46.429

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.19

100

0.466
  cinA Streptococcus mitis SK321

46.19

100

0.466
  cinA Streptococcus mutans UA159

44.686

99.519

0.445
  cinA Streptococcus suis isolate S10

37.26

100

0.373