Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QU579_RS15405 Genome accession   NZ_CP128803
Coordinates   3348591..3349703 (-) Length   370 a.a.
NCBI ID   WP_029857428.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain NJIFDCVp52     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3343591..3354703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU579_RS15375 (QU579_15615) hemF 3344052..3344969 (-) 918 WP_029857903.1 oxygen-dependent coproporphyrinogen oxidase -
  QU579_RS15380 (QU579_15620) - 3345017..3345574 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  QU579_RS15385 (QU579_15625) purE 3345774..3346259 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QU579_RS15390 (QU579_15630) - 3346264..3347397 (+) 1134 WP_045325265.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QU579_RS15395 (QU579_15635) - 3347461..3348030 (-) 570 WP_029857427.1 type I DNA topoisomerase -
  QU579_RS15400 (QU579_15640) - 3348109..3348588 (-) 480 WP_005461440.1 DUF494 family protein -
  QU579_RS15405 (QU579_15645) dprA 3348591..3349703 (-) 1113 WP_029857428.1 DNA-processing protein DprA Machinery gene
  QU579_RS15410 (QU579_15650) - 3349687..3350781 (-) 1095 WP_025818264.1 LysM peptidoglycan-binding domain-containing protein -
  QU579_RS15415 (QU579_15655) def 3350920..3351438 (+) 519 WP_005461416.1 peptide deformylase -
  QU579_RS15420 (QU579_15660) fmt 3351472..3352419 (+) 948 WP_021453792.1 methionyl-tRNA formyltransferase -
  QU579_RS15425 (QU579_15665) rsmB 3352500..3353783 (+) 1284 WP_342821289.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39897.52 Da        Isoelectric Point: 6.4133

>NTDB_id=849663 QU579_RS15405 WP_029857428.1 3348591..3349703(-) (dprA) [Vibrio parahaemolyticus strain NJIFDCVp52]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=849663 QU579_RS15405 WP_029857428.1 3348591..3349703(-) (dprA) [Vibrio parahaemolyticus strain NJIFDCVp52]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTTGCCAAAGATACTCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACAATCGCTGTGCTGGGATCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTGGCGCAGCGAGTGACAGAGAATGGCGCGTTGGTGTCGGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAATCGCATTATTAGTGGTTTATCTCTGGGGGTGTTGGTCGTGGAGGCTGCGGAGAAGAGTGGTTCG
CTGATCACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCTGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.205

100

0.403
  dprA Neisseria meningitidis MC58

38.205

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378