Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRA04_RS08635 Genome accession   NZ_CP128608
Coordinates   1639435..1640673 (+) Length   412 a.a.
NCBI ID   WP_226640245.1    Uniprot ID   -
Organism   Bacillus tropicus strain PUMB_55     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1634435..1645673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA04_RS08605 (QRA04_08585) yfmH 1634486..1635772 (+) 1287 WP_000411945.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QRA04_RS08610 (QRA04_08590) ymfI 1635876..1636589 (+) 714 WP_061401462.1 elongation factor P 5-aminopentanone reductase -
  QRA04_RS08615 (QRA04_08595) - 1636666..1636914 (+) 249 WP_000114448.1 DUF3243 domain-containing protein -
  QRA04_RS08620 (QRA04_08600) - 1637054..1637839 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QRA04_RS08625 (QRA04_08605) - 1637861..1638772 (+) 912 WP_000137477.1 helix-turn-helix domain-containing protein -
  QRA04_RS08630 (QRA04_08610) pgsA 1638836..1639414 (+) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRA04_RS08635 (QRA04_08615) cinA 1639435..1640673 (+) 1239 WP_226640245.1 competence/damage-inducible protein CinA Machinery gene
  QRA04_RS08640 (QRA04_08620) recA 1640818..1641426 (+) 609 Protein_1688 recombinase RecA -
  QRA04_RS08645 (QRA04_08625) - 1641754..1642176 (+) 423 Protein_1689 DNA recombination/repair protein RecA -
  QRA04_RS08650 (QRA04_08630) rny 1642658..1644220 (+) 1563 WP_000204911.1 ribonuclease Y -
  QRA04_RS08655 (QRA04_08635) - 1644383..1645177 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  QRA04_RS08660 (QRA04_08640) spoVS 1645326..1645586 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45454.75 Da        Isoelectric Point: 5.2113

>NTDB_id=849286 QRA04_RS08635 WP_226640245.1 1639435..1640673(+) (cinA) [Bacillus tropicus strain PUMB_55]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDATEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=849286 QRA04_RS08635 WP_226640245.1 1639435..1640673(+) (cinA) [Bacillus tropicus strain PUMB_55]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGTCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCGCCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAGCTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCGGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTACAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381