Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QTN52_RS08815 Genome accession   NZ_CP128551
Coordinates   1800200..1801450 (+) Length   416 a.a.
NCBI ID   WP_289616911.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM123441     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1795200..1806450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN52_RS08785 (QTN52_08785) - 1795283..1796569 (+) 1287 WP_017417796.1 pitrilysin family protein -
  QTN52_RS08790 (QTN52_08790) - 1796629..1797357 (+) 729 WP_014417800.1 SDR family oxidoreductase -
  QTN52_RS08795 (QTN52_08795) - 1797433..1797690 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  QTN52_RS08800 (QTN52_08800) - 1797818..1798609 (+) 792 WP_003154149.1 YmfK family protein -
  QTN52_RS08805 (QTN52_08805) - 1798628..1799527 (+) 900 WP_017417797.1 RodZ domain-containing protein -
  QTN52_RS08810 (QTN52_08810) pgsA 1799601..1800182 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QTN52_RS08815 (QTN52_08815) cinA 1800200..1801450 (+) 1251 WP_289616911.1 competence/damage-inducible protein A Machinery gene
  QTN52_RS08820 (QTN52_08820) recA 1801621..1802664 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  QTN52_RS08825 (QTN52_08825) - 1802831..1804012 (+) 1182 WP_017417799.1 serine hydrolase domain-containing protein -
  QTN52_RS08830 (QTN52_08830) rny 1804305..1805864 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45205.62 Da        Isoelectric Point: 5.5310

>NTDB_id=848847 QTN52_RS08815 WP_289616911.1 1800200..1801450(+) (cinA) [Bacillus velezensis strain SRCM123441]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKHVIRIAEERSDLIIFSGGLGLTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLRGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=848847 QTN52_RS08815 WP_289616911.1 1800200..1801450(+) (cinA) [Bacillus velezensis strain SRCM123441]
ATGGAAATAGCAAAAAAAGCAGAGATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCATGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCTGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGTGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGAGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.423

100

0.894
  cinA Streptococcus mitis NCTC 12261

46.89

100

0.471
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38