NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	QTN46_RS18950	Genome accession	NZ_CP128501
Coordinates	3481117..3481551 (-)	Length	144 a.a.
NCBI ID	WP_289394470.1	Uniprot ID	-
Organism	Bacillus amyloliquefaciens strain SRCM123386
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3476117..3486551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN46_RS18915 (QTN46_18915)	fliW	3476207..3476638 (-)	432	WP_007407475.1	flagellar assembly protein FliW	-
QTN46_RS18920 (QTN46_18920)	-	3476668..3477237 (-)	570	WP_014471091.1	DUF6470 family protein	-
QTN46_RS18925 (QTN46_18925)	flgL	3477329..3478246 (-)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
QTN46_RS18930 (QTN46_18930)	flgK	3478258..3479775 (-)	1518	WP_013353779.1	flagellar hook-associated protein FlgK	-
QTN46_RS18935 (QTN46_18935)	-	3479791..3480273 (-)	483	WP_013353780.1	flagellar protein FlgN	-
QTN46_RS18940 (QTN46_18940)	flgM	3480288..3480554 (-)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
QTN46_RS18945 (QTN46_18945)	-	3480624..3481043 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
QTN46_RS18950 (QTN46_18950)	comFC	3481117..3481551 (-)	435	WP_289394470.1	phosphoribosyltransferase family protein	Machinery gene
QTN46_RS18955 (QTN46_18955)	-	3481684..3481779 (-)	96	Protein_3716	amidophosphoribosyltransferase	-
QTN46_RS18960 (QTN46_18960)	-	3481812..3482096 (-)	285	WP_013353784.1	competence protein ComFB	-
QTN46_RS18965 (QTN46_18965)	comFA	3482155..3483540 (-)	1386	WP_289393955.1	DEAD/DEAH box helicase	Machinery gene
QTN46_RS18970 (QTN46_18970)	-	3483647..3484495 (-)	849	WP_013353786.1	DegV family protein	-
QTN46_RS18975 (QTN46_18975)	degU	3484592..3485281 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
QTN46_RS18980 (QTN46_18980)	degS	3485358..3486521 (-)	1164	WP_289393956.1	two-component sensor histidine kinase DegS	Regulator

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15713.12 Da Isoelectric Point: 10.3140

                                >NTDB_id=847871 QTN46_RS18950 WP_289394470.1 3481117..3481551(-) (comFC) [Bacillus amyloliquefaciens strain SRCM123386]

MKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRLNNEKQ

SKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

Download Length: 435 bp

                                >NTDB_id=847871 QTN46_RS18950 WP_289394470.1 3481117..3481551(-) (comFC) [Bacillus amyloliquefaciens strain SRCM123386]

ATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGG

CTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGAT

TTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAA

TCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGT

CATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGT

TATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(81-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	65.972	100	0.66
comFC/cflB	Streptococcus mitis NCTC 12261	38.462	99.306	0.382
comFC/cflB	Streptococcus mitis SK321	37.762	99.306	0.375
comFC/cflB	Streptococcus pneumoniae TIGR4	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae Rx1	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae D39	37.063	99.306	0.368
comFC/cflB	Streptococcus pneumoniae R6	37.063	99.306	0.368
comFC	Lactococcus lactis subsp. cremoris KW2	36.364	99.306	0.361

Detailed information NTG0847871