Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   QTN46_RS18980 Genome accession   NZ_CP128501
Coordinates   3485358..3486521 (-) Length   387 a.a.
NCBI ID   WP_289393956.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3480358..3491521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS18945 (QTN46_18945) - 3480624..3481043 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  QTN46_RS18950 (QTN46_18950) comFC 3481117..3481551 (-) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  QTN46_RS18955 (QTN46_18955) - 3481684..3481779 (-) 96 Protein_3716 amidophosphoribosyltransferase -
  QTN46_RS18960 (QTN46_18960) - 3481812..3482096 (-) 285 WP_013353784.1 competence protein ComFB -
  QTN46_RS18965 (QTN46_18965) comFA 3482155..3483540 (-) 1386 WP_289393955.1 DEAD/DEAH box helicase Machinery gene
  QTN46_RS18970 (QTN46_18970) - 3483647..3484495 (-) 849 WP_013353786.1 DegV family protein -
  QTN46_RS18975 (QTN46_18975) degU 3484592..3485281 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN46_RS18980 (QTN46_18980) degS 3485358..3486521 (-) 1164 WP_289393956.1 two-component sensor histidine kinase DegS Regulator
  QTN46_RS18985 (QTN46_18985) - 3486744..3487391 (+) 648 WP_013353788.1 YigZ family protein -
  QTN46_RS18990 (QTN46_18990) - 3487396..3488670 (+) 1275 WP_013353789.1 LCP family protein -
  QTN46_RS18995 (QTN46_18995) - 3488770..3489846 (-) 1077 WP_013353790.1 MraY family glycosyltransferase -
  QTN46_RS19000 (QTN46_19000) - 3489979..3491175 (-) 1197 WP_013353791.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 44929.72 Da        Isoelectric Point: 6.8617

>NTDB_id=847874 QTN46_RS18980 WP_289393956.1 3485358..3486521(-) (degS) [Bacillus amyloliquefaciens strain SRCM123386]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSG
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=847874 QTN46_RS18980 WP_289393956.1 3485358..3486521(-) (degS) [Bacillus amyloliquefaciens strain SRCM123386]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCGGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGCCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.065

99.483

0.946