Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QTN46_RS18965 Genome accession   NZ_CP128501
Coordinates   3482155..3483540 (-) Length   461 a.a.
NCBI ID   WP_289393955.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123386     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477155..3488540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN46_RS18925 (QTN46_18925) flgL 3477329..3478246 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  QTN46_RS18930 (QTN46_18930) flgK 3478258..3479775 (-) 1518 WP_013353779.1 flagellar hook-associated protein FlgK -
  QTN46_RS18935 (QTN46_18935) - 3479791..3480273 (-) 483 WP_013353780.1 flagellar protein FlgN -
  QTN46_RS18940 (QTN46_18940) flgM 3480288..3480554 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  QTN46_RS18945 (QTN46_18945) - 3480624..3481043 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  QTN46_RS18950 (QTN46_18950) comFC 3481117..3481551 (-) 435 WP_289394470.1 phosphoribosyltransferase family protein Machinery gene
  QTN46_RS18955 (QTN46_18955) - 3481684..3481779 (-) 96 Protein_3716 amidophosphoribosyltransferase -
  QTN46_RS18960 (QTN46_18960) - 3481812..3482096 (-) 285 WP_013353784.1 competence protein ComFB -
  QTN46_RS18965 (QTN46_18965) comFA 3482155..3483540 (-) 1386 WP_289393955.1 DEAD/DEAH box helicase Machinery gene
  QTN46_RS18970 (QTN46_18970) - 3483647..3484495 (-) 849 WP_013353786.1 DegV family protein -
  QTN46_RS18975 (QTN46_18975) degU 3484592..3485281 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QTN46_RS18980 (QTN46_18980) degS 3485358..3486521 (-) 1164 WP_289393956.1 two-component sensor histidine kinase DegS Regulator
  QTN46_RS18985 (QTN46_18985) - 3486744..3487391 (+) 648 WP_013353788.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52731.36 Da        Isoelectric Point: 10.2042

>NTDB_id=847872 QTN46_RS18965 WP_289393955.1 3482155..3483540(-) (comFA) [Bacillus amyloliquefaciens strain SRCM123386]
MSVGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=847872 QTN46_RS18965 WP_289393955.1 3482155..3483540(-) (comFA) [Bacillus amyloliquefaciens strain SRCM123386]
ATGTCCGTAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625