Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QSV38_RS05650 Genome accession   NZ_CP128410
Coordinates   1086682..1087863 (-) Length   393 a.a.
NCBI ID   WP_289646185.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1081682..1092863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS05610 (QSV38_05610) comX/sigX 1082112..1082582 (-) 471 WP_130554428.1 sigma-70 family RNA polymerase sigma factor Regulator
  QSV38_RS05615 (QSV38_05615) - 1082765..1083314 (-) 550 Protein_1089 nucleotidyltransferase family protein -
  QSV38_RS05620 (QSV38_05620) - 1083344..1083484 (-) 141 Protein_1090 ISL3 family transposase -
  QSV38_RS05625 (QSV38_05625) - 1083737..1084057 (-) 321 WP_289646181.1 DUF1292 domain-containing protein -
  QSV38_RS05630 (QSV38_05630) ruvX 1084069..1084488 (-) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  QSV38_RS05635 (QSV38_05635) - 1084488..1084754 (-) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  QSV38_RS05640 (QSV38_05640) spx 1084864..1085262 (-) 399 WP_217374497.1 transcriptional regulator Spx -
  QSV38_RS05645 (QSV38_05645) recA 1085476..1086630 (-) 1155 WP_172036461.1 recombinase RecA Machinery gene
  QSV38_RS05650 (QSV38_05650) cinA 1086682..1087863 (-) 1182 WP_289646185.1 competence/damage-inducible protein A Machinery gene
  QSV38_RS05655 (QSV38_05655) - 1087900..1088469 (-) 570 WP_289646187.1 DNA-3-methyladenine glycosylase I -
  QSV38_RS05660 (QSV38_05660) ruvA 1088994..1089584 (-) 591 WP_289646189.1 Holliday junction branch migration protein RuvA -
  QSV38_RS05665 (QSV38_05665) mutL 1089830..1091767 (-) 1938 WP_289649339.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42802.81 Da        Isoelectric Point: 4.4569

>NTDB_id=847314 QSV38_RS05650 WP_289646185.1 1086682..1087863(-) (cinA) [Streptococcus parasuis strain 7500]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSDLVILCGGLGPTEDDLTKQT
LATFLQKELVVDELAMAKLDRFFTSRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPFLTQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTIAPYAKVGEVTLRLSTKADSQEEANVRLNQLEEE
ILQRDHLRVFFYAYGDDNSLVKTVATLLEEKKQSLGILENGTGGLLQAELSMALAGQPYYSGGKIIGQLGTESGGLSEEA
SRIREELQADLGLVVSVVVKPESTVDNVLAKVYLALASTSGISKKEVDLGGYSWQYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=847314 QSV38_RS05650 WP_289646185.1 1086682..1087863(-) (cinA) [Streptococcus parasuis strain 7500]
ATGAAAGCAGAATTAATTGCTGTTGGAACAGAAATATTGACAGGTCAAATTGTGAATACGAATGCTCAATTCTTGTCAGA
AAAATGTGCAGAGCTAGGTATCGATGTATACTTCCACACTGCTGTAGGTGATAATGAACAGCGACTATTGTCTGTACTTG
AAATTGCAAGTAAACGAAGTGATCTGGTCATTTTATGTGGTGGTTTAGGTCCTACTGAAGACGACTTGACCAAGCAAACT
TTAGCGACATTTTTGCAAAAAGAGTTGGTTGTTGACGAACTAGCGATGGCAAAATTAGACCGTTTTTTTACCAGTCGACC
AGGTCGTGTTCGCACACCTAATAATGAGCGTCAAGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAACCCAGCTGGTT
TAGCTGTAGGTGGTATGATTGAGCAAGATGGTGTGACCTATATTGTTTTGCCTGGCCCACCAAGTGAACTCAAGGCCATG
TTTTCTGAGAGTCTGTTACCTTTTTTGACTCAATCTCAGCAACAACTTTACTCGCGTGTCCTACGCTTTTTTGGAATAGG
TGAAAGCCAGTTGGTGACTGTTTTAGCGGATTTGATTGACAAGCAGACAGACCCGACTATTGCGCCTTATGCAAAAGTTG
GAGAGGTGACGCTTCGTTTATCTACAAAGGCAGATAGCCAGGAAGAAGCGAACGTTCGTTTGAATCAGTTGGAAGAAGAG
ATATTGCAACGTGACCATTTGAGAGTTTTTTTCTATGCATATGGGGATGACAATAGTTTGGTTAAAACCGTAGCGACTCT
TTTAGAGGAAAAGAAACAATCTTTGGGCATCCTAGAGAATGGAACAGGTGGTTTATTACAAGCAGAATTGAGTATGGCTT
TGGCTGGTCAGCCGTATTATAGTGGAGGAAAAATCATCGGTCAGCTAGGGACAGAATCGGGTGGGCTATCAGAAGAAGCA
AGTCGCATTCGGGAGGAACTACAAGCTGATTTAGGGCTAGTTGTGTCGGTGGTAGTCAAACCAGAATCAACAGTAGACAA
CGTACTTGCTAAAGTATATCTAGCCTTGGCCAGTACCTCGGGTATTTCTAAAAAAGAGGTAGATTTAGGAGGTTATTCAT
GGCAATACCTTCGTCAACTTGCTTGTTTACAGGCGTTAGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

86.514

100

0.865
  cinA Streptococcus pneumoniae TIGR4

55.288

100

0.585
  cinA Streptococcus mitis SK321

55.288

100

0.585
  cinA Streptococcus mitis NCTC 12261

55.048

100

0.583
  cinA Streptococcus pneumoniae Rx1

54.808

100

0.58
  cinA Streptococcus pneumoniae R6

54.808

100

0.58
  cinA Streptococcus mutans UA159

55.474

100

0.58
  cinA Streptococcus pneumoniae D39

54.567

100

0.578
  cinA Bacillus subtilis subsp. subtilis str. 168

41.176

99.491

0.41