Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3L48_RS09740 Genome accession   NZ_CP128196
Coordinates   2024112..2025362 (+) Length   416 a.a.
NCBI ID   WP_286231519.1    Uniprot ID   -
Organism   Neobacillus mesonae strain NS-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2019112..2030362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3L48_RS09710 - 2019147..2020436 (+) 1290 WP_286231513.1 pitrilysin family protein -
  P3L48_RS09715 - 2020503..2021225 (+) 723 WP_286231514.1 SDR family oxidoreductase -
  P3L48_RS09720 - 2021308..2021553 (+) 246 WP_286231515.1 DUF3243 domain-containing protein -
  P3L48_RS09725 - 2021693..2022484 (+) 792 WP_286232276.1 YmfK family protein -
  P3L48_RS09730 - 2022508..2023419 (+) 912 WP_286231516.1 helix-turn-helix domain-containing protein -
  P3L48_RS09735 pgsA 2023511..2024095 (+) 585 WP_286231517.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3L48_RS09740 cinA 2024112..2025362 (+) 1251 WP_286231519.1 competence/damage-inducible protein A Machinery gene
  P3L48_RS09745 recA 2025619..2026227 (+) 609 Protein_1875 recombinase RecA -
  P3L48_RS09750 - 2026559..2026990 (+) 432 Protein_1876 DNA recombination/repair protein RecA -
  P3L48_RS09755 rny 2027295..2028854 (+) 1560 WP_066396304.1 ribonuclease Y -
  P3L48_RS09760 - 2028943..2029740 (+) 798 WP_127486341.1 TIGR00282 family metallophosphoesterase -
  P3L48_RS09765 spoVS 2029945..2030205 (+) 261 WP_038541258.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45007.00 Da        Isoelectric Point: 5.9593

>NTDB_id=846669 P3L48_RS09740 WP_286231519.1 2024112..2025362(+) (cinA) [Neobacillus mesonae strain NS-6]
MNAEIIAVGSELLLGQIVNTNAKFISQQLAGAGIDVYFHTVVGDNPARLKAAIKIAEERANIIIFTGGLGPTKDDLTKET
IAKHLGKQLVMDDTALAGIELYFHRTNRIMTVNNRKQTLIIEGSHVLPNNHGMAPGMLLKKGSRIYILLPGPPKEMEPMF
SQYGIKALSAEVGLKEQIVSRVLRFFGIGEAALETEIIDLIDAQSNPTIAPLAGDGEVTLRLTAKHTDEAMAASMLDEVE
EKIRQRVGQYIYGYDSSSLLEELTKLLKEKKLTITAAESLTGGMFQQEITSISGASSVFKGGVVCYANEIKQLMLQVKPE
TLEVHGAVSEQCATELAENAARIFGTDIGISFTGVAGPDELEGKPVGTVYIGIAMKGRPTMVEEIILGGTRAANRNRAVK
FGCYFLIKTIRESQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=846669 P3L48_RS09740 WP_286231519.1 2024112..2025362(+) (cinA) [Neobacillus mesonae strain NS-6]
ATGAATGCGGAAATTATCGCAGTGGGTTCAGAGCTTTTATTAGGTCAAATTGTTAATACGAATGCCAAGTTTATTTCACA
ACAGTTAGCCGGGGCGGGAATTGATGTATATTTTCATACGGTTGTTGGAGACAATCCTGCAAGGCTCAAGGCCGCTATTA
AGATTGCCGAAGAGCGGGCAAATATTATTATTTTTACCGGCGGACTTGGACCGACGAAGGATGATTTAACAAAGGAAACG
ATCGCGAAGCATCTTGGGAAGCAGCTGGTAATGGATGACACAGCACTAGCAGGGATTGAACTTTATTTTCACAGGACAAA
TCGGATCATGACAGTAAACAACCGAAAGCAGACACTCATTATAGAAGGTTCCCATGTCCTTCCTAACAATCATGGAATGG
CGCCTGGAATGTTGTTGAAAAAAGGCAGCCGCATTTATATCCTCCTTCCGGGCCCGCCAAAGGAAATGGAACCGATGTTT
TCACAATATGGAATAAAGGCGCTTTCTGCGGAGGTGGGTCTTAAGGAACAAATCGTGTCACGCGTACTCCGTTTTTTTGG
AATTGGCGAAGCGGCATTGGAAACTGAAATTATCGACCTTATTGATGCCCAGAGCAATCCTACGATTGCACCGCTTGCCG
GGGATGGTGAGGTTACCTTAAGGCTGACAGCAAAGCATACGGATGAAGCTATGGCGGCCTCGATGCTGGATGAAGTGGAA
GAGAAAATTAGGCAGCGGGTTGGACAGTATATATATGGTTATGATAGTTCTTCACTTTTGGAAGAACTAACGAAATTGTT
AAAGGAAAAGAAATTGACGATTACAGCGGCAGAAAGTTTAACCGGAGGCATGTTTCAACAGGAAATCACCTCAATTTCAG
GAGCAAGTTCGGTATTCAAAGGCGGAGTAGTCTGCTATGCGAATGAAATTAAGCAGCTGATGTTACAGGTCAAACCGGAA
ACACTCGAAGTCCATGGAGCTGTCAGCGAACAATGTGCTACTGAATTAGCGGAGAATGCAGCGCGGATTTTCGGTACTGA
CATCGGCATCAGCTTTACCGGCGTTGCAGGTCCCGATGAACTGGAAGGAAAGCCGGTAGGGACGGTTTATATTGGGATTG
CGATGAAGGGCCGCCCGACTATGGTTGAGGAAATTATACTAGGCGGAACGAGAGCCGCGAATCGGAACCGTGCTGTTAAA
TTTGGCTGTTATTTTTTAATCAAGACTATACGGGAATCACAGAATGCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.268

98.558

0.584
  cinA Streptococcus mutans UA159

46.778

100

0.471
  cinA Streptococcus mitis SK321

48.039

98.077

0.471
  cinA Streptococcus pneumoniae TIGR4

47.549

98.077

0.466
  cinA Streptococcus mitis NCTC 12261

47.304

98.077

0.464
  cinA Streptococcus pneumoniae D39

47.059

98.077

0.462
  cinA Streptococcus pneumoniae Rx1

47.059

98.077

0.462
  cinA Streptococcus pneumoniae R6

47.059

98.077

0.462
  cinA Streptococcus suis isolate S10

41.013

94.952

0.389