Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QR722_RS03975 Genome accession   NZ_CP128185
Coordinates   948703..949911 (-) Length   402 a.a.
NCBI ID   WP_286285464.1    Uniprot ID   -
Organism   Aliiglaciecola sp. LCG003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 943703..954911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR722_RS03950 (QR722_03950) - 945430..945870 (-) 441 WP_286285453.1 hypothetical protein -
  QR722_RS03955 (QR722_03955) yacG 945870..946100 (-) 231 WP_286285454.1 DNA gyrase inhibitor YacG -
  QR722_RS03960 (QR722_03960) zapD 946126..946878 (-) 753 WP_286285456.1 cell division protein ZapD -
  QR722_RS03965 (QR722_03965) coaE 947075..947698 (-) 624 WP_286285460.1 dephospho-CoA kinase -
  QR722_RS03970 (QR722_03970) pilD 947695..948576 (-) 882 WP_286285462.1 A24 family peptidase Machinery gene
  QR722_RS03975 (QR722_03975) pilC 948703..949911 (-) 1209 WP_286285464.1 type II secretion system F family protein Machinery gene
  QR722_RS03980 (QR722_03980) - 949990..950400 (-) 411 WP_286285466.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QR722_RS03985 (QR722_03985) nadC 950604..951440 (-) 837 WP_286285468.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QR722_RS03990 (QR722_03990) - 951479..952006 (-) 528 WP_286285471.1 TIGR02281 family clan AA aspartic protease -
  QR722_RS03995 (QR722_03995) ampD 952078..952629 (+) 552 WP_286285473.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QR722_RS04000 (QR722_04000) ampE 952667..953491 (+) 825 WP_286285475.1 beta-lactamase regulator AmpE -
  QR722_RS04005 (QR722_04005) pdhR 953745..954500 (+) 756 WP_286285477.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43266.75 Da        Isoelectric Point: 9.3223

>NTDB_id=846551 QR722_RS03975 WP_286285464.1 948703..949911(-) (pilC) [Aliiglaciecola sp. LCG003]
MAKTAELYVWIGKDKKGHSRKGEISAASISEAKNLLRRQGVSATKVKKLAKPLFGKKDKVTANDISVLSRQIATMLSAGV
SLIQTIDMIAQGHAKTSMRKMLSEISDEVKAGNPLSNSLRKHPNQFEDLYCDLVETGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVIVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLGISNFVQDYGIFIGAGMVAAGIAFAKAH
SRSKNLRDKVDQITLKVPVIGEILKKASIARFTRTLATTFAAGVPLIGALDSAAGASGNAVFRDAILFIKREVAGGLQMN
VAMRATGVFPDMVTQMIAIGEESGAVDDMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=846551 QR722_RS03975 WP_286285464.1 948703..949911(-) (pilC) [Aliiglaciecola sp. LCG003]
ATGGCAAAGACAGCAGAGCTTTATGTTTGGATTGGCAAAGACAAAAAGGGCCACAGCCGTAAAGGTGAAATCAGCGCCGC
ATCGATTTCTGAAGCCAAGAATTTACTCCGTCGCCAAGGTGTATCGGCCACCAAAGTTAAGAAGCTAGCAAAACCATTAT
TCGGTAAAAAAGACAAAGTCACCGCCAATGATATCAGCGTTTTGTCTCGCCAAATCGCCACTATGTTGAGCGCAGGCGTC
AGTCTTATCCAAACCATCGACATGATTGCCCAAGGCCATGCCAAAACCAGTATGCGCAAGATGCTCTCAGAAATTTCCGA
TGAAGTTAAAGCCGGTAATCCGCTGTCAAATTCGCTGCGCAAACATCCCAATCAATTTGAAGATTTATATTGTGATTTGG
TTGAAACCGGTGAGCAATCCGGTGCGCTAGAAACTATTTACGATCGTATCGCTACCTATAAAGAAAAAGCCGAAGCGCTT
AAATCGAAAATTAAGAAAGCCATGTTTTACCCTATTGCGGTTATTGTGGTGGCGTTTATCGTAACCACCATTTTGTTGGT
TTTCGTGGTTCCTCAGTTTGAAGAAATATTTAGTAGTTTTGGCGCAGAATTACCCGCCTTTACCCAATTCGTATTAGGCA
TTTCTAATTTTGTCCAAGATTATGGCATCTTTATCGGCGCGGGCATGGTAGCTGCTGGTATTGCCTTTGCTAAAGCCCAT
AGTCGCTCTAAAAACTTACGGGATAAAGTTGATCAGATAACCTTAAAAGTACCGGTGATTGGTGAGATTTTGAAAAAAGC
CTCAATCGCTCGCTTTACCCGCACCCTAGCCACCACATTTGCCGCCGGAGTTCCCCTGATTGGCGCCCTCGACTCCGCTG
CAGGTGCCTCCGGTAACGCGGTGTTTCGCGATGCCATATTGTTTATCAAACGTGAAGTAGCTGGTGGTCTGCAAATGAAT
GTCGCTATGCGTGCAACTGGCGTATTTCCGGATATGGTCACCCAGATGATTGCTATTGGTGAAGAATCAGGCGCGGTGGA
TGACATGCTAAGTAAAATAGCGACCATTTATGAAGCAGAAGTAGATGACATGGTAGATGGCTTAACTAGTTTGTTAGAAC
CGATGATCATGGCCGTATTGGGCGTTGTCATTGGTGGCTTGATTGTGGCCATGTACCTGCCCATCTTCGAAATGGGTAAT
GTTGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

98.507

0.572
  pilC Acinetobacter baumannii D1279779

51.613

100

0.517
  pilC Acinetobacter baylyi ADP1

51.88

99.254

0.515
  pilC Legionella pneumophila strain ERS1305867

50.503

99.005

0.5
  pilC Vibrio cholerae strain A1552

45.455

98.507

0.448
  pilG Neisseria gonorrhoeae MS11

42.651

100

0.44
  pilC Vibrio campbellii strain DS40M4

43.687

98.507

0.43
  pilG Neisseria meningitidis 44/76-A

44.416

95.771

0.425