Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRE63_RS19330 Genome accession   NZ_CP128129
Coordinates   3753579..3754817 (-) Length   412 a.a.
NCBI ID   WP_113709224.1    Uniprot ID   A0A328L553
Organism   Bacillus mycoides strain SIN2.2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3748579..3759817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE63_RS19310 (QRE63_19375) spoVS 3748975..3749235 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  QRE63_RS19315 (QRE63_19380) - 3749385..3750179 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  QRE63_RS19320 (QRE63_19385) rny 3750359..3751921 (-) 1563 WP_002111330.1 ribonuclease Y -
  QRE63_RS19325 (QRE63_19390) recA 3752405..3753436 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  QRE63_RS19330 (QRE63_19395) cinA 3753579..3754817 (-) 1239 WP_113709224.1 competence/damage-inducible protein A Machinery gene
  QRE63_RS19335 (QRE63_19400) pgsA 3754838..3755416 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRE63_RS19340 (QRE63_19405) - 3755480..3756421 (-) 942 WP_113709225.1 helix-turn-helix domain-containing protein -
  QRE63_RS19345 (QRE63_19410) - 3756443..3757228 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QRE63_RS19350 (QRE63_19415) - 3757368..3757616 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  QRE63_RS19355 (QRE63_19420) - 3757693..3758406 (-) 714 WP_002014593.1 SDR family oxidoreductase -
  QRE63_RS19360 (QRE63_19425) - 3758524..3759810 (-) 1287 WP_002014592.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45578.91 Da        Isoelectric Point: 4.9494

>NTDB_id=846155 QRE63_RS19330 WP_113709224.1 3753579..3754817(-) (cinA) [Bacillus mycoides strain SIN2.2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILYVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=846155 QRE63_RS19330 WP_113709224.1 3753579..3754817(-) (cinA) [Bacillus mycoides strain SIN2.2]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTATATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A328L553

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376