Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QRD87_RS17380 Genome accession   NZ_CP128109
Coordinates   3324926..3325393 (-) Length   155 a.a.
NCBI ID   WP_038475569.1    Uniprot ID   A0A653WTG9
Organism   Bacillus altitudinis strain D9_B_49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3319926..3330393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS17345 (QRD87_17345) fliW 3320062..3320496 (-) 435 WP_007499985.1 flagellar assembly protein FliW -
  QRD87_RS17350 (QRD87_17350) - 3320525..3321103 (-) 579 WP_008348255.1 DUF6470 family protein -
  QRD87_RS17355 (QRD87_17355) flgL 3321150..3322061 (-) 912 WP_171465820.1 flagellar hook-associated protein FlgL -
  QRD87_RS17360 (QRD87_17360) flgK 3322070..3323590 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  QRD87_RS17365 (QRD87_17365) - 3323606..3324088 (-) 483 WP_007499977.1 flagellar protein FlgN -
  QRD87_RS17370 (QRD87_17370) flgM 3324107..3324370 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD87_RS17375 (QRD87_17375) - 3324450..3324869 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QRD87_RS17380 (QRD87_17380) comFC 3324926..3325393 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  QRD87_RS20350 - 3325445..3325648 (-) 204 Protein_3364 hypothetical protein -
  QRD87_RS17385 (QRD87_17385) - 3325609..3325902 (-) 294 WP_008348267.1 competence protein ComFB -
  QRD87_RS17390 (QRD87_17390) comFA 3325967..3327094 (-) 1128 WP_234900744.1 DEAD/DEAH box helicase Machinery gene
  QRD87_RS17395 (QRD87_17395) - 3327466..3328308 (-) 843 WP_265153765.1 DegV family protein -
  QRD87_RS17400 (QRD87_17400) degU 3328520..3329209 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17700.76 Da        Isoelectric Point: 10.7974

>NTDB_id=845872 QRD87_RS17380 WP_038475569.1 3324926..3325393(-) (comFC) [Bacillus altitudinis strain D9_B_49]
MNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPIL
EPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=845872 QRD87_RS17380 WP_038475569.1 3324926..3325393(-) (comFC) [Bacillus altitudinis strain D9_B_49]
ATGAATCGGTCTGTTTATGCTTACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTT
AGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTC
CTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTG
GAGCCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCA
ATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATC
ATGCAGCAAAAATTTTAAAAGACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(88-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653WTG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

54.839

100

0.548
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

98.71

0.406
  comFC/cflB Streptococcus mitis SK321

41.176

98.71

0.406
  comFC/cflB Streptococcus pneumoniae Rx1

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae D39

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae R6

40.523

98.71

0.4
  comFC/cflB Streptococcus pneumoniae TIGR4

40.523

98.71

0.4
  comFC Lactococcus lactis subsp. cremoris KW2

42.657

92.258

0.394