Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QRD87_RS17400 Genome accession   NZ_CP128109
Coordinates   3328520..3329209 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain D9_B_49     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323520..3334209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS17365 (QRD87_17365) - 3323606..3324088 (-) 483 WP_007499977.1 flagellar protein FlgN -
  QRD87_RS17370 (QRD87_17370) flgM 3324107..3324370 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD87_RS17375 (QRD87_17375) - 3324450..3324869 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QRD87_RS17380 (QRD87_17380) comFC 3324926..3325393 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  QRD87_RS20350 - 3325445..3325648 (-) 204 Protein_3364 hypothetical protein -
  QRD87_RS17385 (QRD87_17385) - 3325609..3325902 (-) 294 WP_008348267.1 competence protein ComFB -
  QRD87_RS17390 (QRD87_17390) comFA 3325967..3327094 (-) 1128 WP_234900744.1 DEAD/DEAH box helicase Machinery gene
  QRD87_RS17395 (QRD87_17395) - 3327466..3328308 (-) 843 WP_265153765.1 DegV family protein -
  QRD87_RS17400 (QRD87_17400) degU 3328520..3329209 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QRD87_RS17405 (QRD87_17405) degS 3329274..3330449 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  QRD87_RS17410 (QRD87_17410) - 3330671..3331339 (+) 669 WP_017357860.1 YigZ family protein -
  QRD87_RS17415 (QRD87_17415) - 3331324..3332421 (+) 1098 WP_171465825.1 LCP family protein -
  QRD87_RS17420 (QRD87_17420) - 3332460..3333527 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=845874 QRD87_RS17400 WP_008348273.1 3328520..3329209(-) (degU) [Bacillus altitudinis strain D9_B_49]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=845874 QRD87_RS17400 WP_008348273.1 3328520..3329209(-) (degU) [Bacillus altitudinis strain D9_B_49]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996