Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRD87_RS17390 Genome accession   NZ_CP128109
Coordinates   3325967..3327094 (-) Length   375 a.a.
NCBI ID   WP_234900744.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3320967..3332094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS17355 (QRD87_17355) flgL 3321150..3322061 (-) 912 WP_171465820.1 flagellar hook-associated protein FlgL -
  QRD87_RS17360 (QRD87_17360) flgK 3322070..3323590 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  QRD87_RS17365 (QRD87_17365) - 3323606..3324088 (-) 483 WP_007499977.1 flagellar protein FlgN -
  QRD87_RS17370 (QRD87_17370) flgM 3324107..3324370 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD87_RS17375 (QRD87_17375) - 3324450..3324869 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QRD87_RS17380 (QRD87_17380) comFC 3324926..3325393 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  QRD87_RS20350 - 3325445..3325648 (-) 204 Protein_3364 hypothetical protein -
  QRD87_RS17385 (QRD87_17385) - 3325609..3325902 (-) 294 WP_008348267.1 competence protein ComFB -
  QRD87_RS17390 (QRD87_17390) comFA 3325967..3327094 (-) 1128 WP_234900744.1 DEAD/DEAH box helicase Machinery gene
  QRD87_RS17395 (QRD87_17395) - 3327466..3328308 (-) 843 WP_265153765.1 DegV family protein -
  QRD87_RS17400 (QRD87_17400) degU 3328520..3329209 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QRD87_RS17405 (QRD87_17405) degS 3329274..3330449 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  QRD87_RS17410 (QRD87_17410) - 3330671..3331339 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42914.91 Da        Isoelectric Point: 10.4411

>NTDB_id=845873 QRD87_RS17390 WP_234900744.1 3325967..3327094(-) (comFA) [Bacillus altitudinis strain D9_B_49]
MLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLYEHITK
KKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
SESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=845873 QRD87_RS17390 WP_234900744.1 3325967..3327094(-) (comFA) [Bacillus altitudinis strain D9_B_49]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACGAGTTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAAACAAATTTGATC
TGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAACGGCTTCAGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGTATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGGTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
TCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGTATACTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(232-335)

Type III restriction enzyme, res subunit (ResIII)

(32-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.946

98.667

0.552
  comFA/cflA Streptococcus pneumoniae Rx1

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae D39

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae R6

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae TIGR4

40.395

94.4

0.381
  comFA Latilactobacillus sakei subsp. sakei 23K

38.587

98.133

0.379
  comFA/cflA Streptococcus mitis NCTC 12261

40.113

94.4

0.379
  comFA/cflA Streptococcus mitis SK321

38.983

94.4

0.368
  comFA Lactococcus lactis subsp. cremoris KW2

37.432

97.6

0.365