Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V2I99_RS25345 Genome accession   NZ_CP143964
Coordinates   5039383..5039919 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain PNUSAE147326     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5034383..5044919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I99_RS25325 (V2I99_25325) soxR 5036112..5036576 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  V2I99_RS25330 (V2I99_25330) soxS 5036662..5036985 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  V2I99_RS25335 (V2I99_25335) pdeC 5036988..5038574 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  V2I99_RS25340 (V2I99_25340) yjcB 5039003..5039284 (+) 282 WP_001295689.1 YjcB family protein -
  V2I99_RS25345 (V2I99_25345) ssb 5039383..5039919 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V2I99_RS25350 (V2I99_25350) uvrA 5040174..5042996 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  V2I99_RS25355 (V2I99_25355) yjbR 5043031..5043387 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  V2I99_RS25360 (V2I99_25360) yjbQ 5043391..5043807 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V2I99_RS25365 (V2I99_25365) aphA 5043918..5044631 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=845875 V2I99_RS25345 WP_000168305.1 5039383..5039919(-) (ssb) [Escherichia coli strain PNUSAE147326]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=845875 V2I99_RS25345 WP_000168305.1 5039383..5039919(-) (ssb) [Escherichia coli strain PNUSAE147326]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489