Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRY07_RS11180 Genome accession   NZ_CP128107
Coordinates   2064768..2065124 (+) Length   118 a.a.
NCBI ID   WP_078181759.1    Uniprot ID   -
Organism   Bacillus cereus strain D5_B_69     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2059768..2070124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY07_RS11155 (QRY07_11155) - 2060041..2060799 (-) 759 WP_204208141.1 hypothetical protein -
  QRY07_RS11160 (QRY07_11160) - 2060909..2061556 (+) 648 WP_002202190.1 HD domain-containing protein -
  QRY07_RS11165 (QRY07_11165) - 2061553..2063448 (+) 1896 WP_002158067.1 ABC-F family ATP-binding cassette domain-containing protein -
  QRY07_RS11170 (QRY07_11170) - 2063525..2064256 (+) 732 WP_002200683.1 Bax inhibitor-1/YccA family protein -
  QRY07_RS11175 (QRY07_11175) - 2064353..2064606 (+) 254 Protein_1984 DUF4318 domain-containing protein -
  QRY07_RS11180 (QRY07_11180) ssbA 2064768..2065124 (+) 357 WP_078181759.1 single-stranded DNA-binding protein Machinery gene
  QRY07_RS11185 (QRY07_11185) - 2065157..2065747 (-) 591 WP_286119363.1 TetR/AcrR family transcriptional regulator -
  QRY07_RS11190 (QRY07_11190) - 2065983..2067116 (-) 1134 WP_002200679.1 FAD-dependent monooxygenase -
  QRY07_RS11195 (QRY07_11195) - 2067375..2068502 (+) 1128 WP_002200678.1 conserved virulence factor C family protein -
  QRY07_RS11200 (QRY07_11200) - 2068506..2068889 (+) 384 WP_002158060.1 DUF393 domain-containing protein -
  QRY07_RS11205 (QRY07_11205) - 2068973..2069407 (+) 435 WP_000063703.1 BrxA/BrxB family bacilliredoxin -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13505.41 Da        Isoelectric Point: 9.0861

>NTDB_id=845791 QRY07_RS11180 WP_078181759.1 2064768..2065124(+) (ssbA) [Bacillus cereus strain D5_B_69]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCIVWRKSAENVTEYCMKGSLVGITGRIHTS
NYDDEQGKRVYRTEVVIESITFLERRREGASGGNVKEH

Nucleotide


Download         Length: 357 bp        

>NTDB_id=845791 QRY07_RS11180 WP_078181759.1 2064768..2065124(+) (ssbA) [Bacillus cereus strain D5_B_69]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGAGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATAAATTGTATTGTTT
GGCGAAAATCGGCTGAAAATGTAACAGAATATTGTATGAAGGGCTCACTTGTTGGGATTACCGGGCGTATTCATACGAGT
AATTACGATGATGAGCAAGGAAAGAGAGTATATAGAACTGAAGTTGTGATTGAGAGTATTACATTTTTAGAGAGAAGGCG
GGAGGGGGCATCGGGGGGAAACGTAAAAGAGCATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

89.831

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

89.831

0.483
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

94.915

0.483
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

88.983

0.407
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

93.22

0.398
  ssbA Streptococcus mutans UA159

38.136

100

0.381
  ssbB/cilA Streptococcus mitis NCTC 12261

39.091

93.22

0.364
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.091

93.22

0.364