Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QSG83_RS02220 Genome accession   NZ_CP127892
Coordinates   246438..248573 (+) Length   711 a.a.
NCBI ID   WP_317028613.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 241438..253573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02200 (QSG83_02205) pilM 243453..244511 (+) 1059 WP_168418910.1 pilus assembly protein PilM Machinery gene
  QSG83_RS02205 (QSG83_02210) pilN 244511..245146 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  QSG83_RS02210 (QSG83_02215) comO 245143..245853 (+) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG83_RS02215 (QSG83_02220) pilP 245853..246377 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  QSG83_RS02220 (QSG83_02225) pilQ 246438..248573 (+) 2136 WP_317028613.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG83_RS02225 (QSG83_02230) aroK 248611..249153 (+) 543 WP_178319363.1 shikimate kinase AroK -
  QSG83_RS02230 (QSG83_02235) aroB 249173..250252 (+) 1080 WP_317028238.1 3-dehydroquinate synthase -
  QSG83_RS02235 (QSG83_02240) - 250263..251108 (+) 846 WP_178319365.1 hypothetical protein -
  QSG83_RS02240 (QSG83_02245) tnpA 251167..251565 (-) 399 WP_178319366.1 IS200/IS605 family transposase -
  QSG83_RS02245 (QSG83_02250) - 251605..252822 (+) 1218 WP_178319367.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 76792.96 Da        Isoelectric Point: 5.3394

>NTDB_id=845080 QSG83_RS02220 WP_317028613.1 246438..248573(+) (pilQ) [Acinetobacter towneri strain SAAt401]
MNNLFRQFSIGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPARLILDFDKAQQTLKQNSI
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPVAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPTHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITQGKNASRGGSNTNTGTDPLGDSV
GSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHLL
VGGSDTTLWNLREPEKDDDTGGWKYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGLPTPTGQLTINKNAV
NTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=845080 QSG83_RS02220 WP_317028613.1 246438..248573(+) (pilQ) [Acinetobacter towneri strain SAAt401]
ATGAACAATTTGTTCCGTCAGTTTTCAATAGGCGCAGTCGCAATGGCGGTGATGCAAGTGGCCAATGCCCAAGTGAGCAT
TACCAACATCGTACCTATGCAAATTCCAGGACAAGGCACGGAAATTCGTGTCATGTTCAATGGCTTACCACCACAGCCAG
CGGCATATCAGTTGGAACAACCTGCGCGTTTGATTCTAGACTTTGATAAAGCACAACAAACGCTGAAACAAAACAGTATT
GCAGTGGCGACCAAAGAAGCGAGTTCTGTAGAGGTCAGCTCAGATGCGCAGCGTTCACGTTTAACTGTGAACTTGGCTGA
TGCAGGTGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATCAACTCAACAACGGCAACCCCTGTGGCTG
CCGTGACTGCCCAACGTAGTGCGCAAGGTGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTGCGTACTTTAGGCAATAA
AGTACCAACACATTTGGCACGCCGTTTAAATGTAAATGATTTTGCAACACCTGTGTCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACCATTCAGGCTGCGGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTATACAGGCAAAAAGATTTCACTGGA
TTTCCAAGACATTGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCAGCAGACACTG
TGCAAGGCAACATTACCTTACGTTTAAAAGATGTACCTTGGGATCAGGCGTTAGACATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTGATTTGGATTGCACCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCGCAAAGTGTGAAACTGGCGCCACTACAAACTGAATATATTCAATTGAACTATGCCAAAGCGGCAGATATTGAAA
AACTAATTACGCAAGGCAAGAATGCATCACGTGGTGGTTCAAATACCAATACAGGTACTGATCCATTAGGCGATAGCGTT
GGTAGCTTGTTGAGTCCACGCGGTACAGTGTCGGTAGATCCACGTACCAATACCTTAATCATCAACGATACATCGGCAAA
AATTGATCAGATTCGTCAAATGATTGATTTGCTAGATGTATCTGTGAAGCAAGTGATGATTGAAGCACGTATTGTTCGTG
CAACCACAGATTTCACCAAAGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAATAATAACCACTTGTTG
GTGGGTGGTAGCGATACGACTTTGTGGAACTTGCGTGAACCAGAAAAAGATGATGATACGGGTGGTTGGAAGTATGAAAT
TGAACGTCCGCAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAATCAGTT
TGTCTGACTTTATGCTCGATTTGGAGTTGTCTGCATTACAAGCAGATGGTTACGGTGAAGTGATTTCGACACCAAAAGTT
CTGACTGCAGATAAGCAAAATGCCAAAGTGGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAAGGTGGTGGTGTCAA
TGCAGTATCTACCACAGAATTCATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATCACGCCAGATGGCAAGGTGC
AAATGCAATTGAATATCACCAGTGACTCACCAGGTTTACCAACACCAACAGGTCAGCTCACCATTAACAAAAACGCCGTG
AATACCAATGTTCTGGTAGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAACAACAAACGGCTAACTCACAAAC
CAAGGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAACGTGAGT
TGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

AMIN domain (AMIN)

(40-120)

Bacterial type II and III secretion system protein (Secretin)

(545-703)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.934

100

0.783
  pilQ Acinetobacter baumannii strain A118

76.796

100

0.782
  comQ Acinetobacter baylyi ADP1

74.545

100

0.75
  pilQ Pseudomonas aeruginosa PAK

40.625

99.015

0.402
  pilQ Legionella pneumophila strain ERS1305867

37.73

99.156

0.374
  pilQ Legionella pneumophila strain Lp02

37.73

99.156

0.374