Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSG83_RS02205 Genome accession   NZ_CP127892
Coordinates   244511..245146 (+) Length   211 a.a.
NCBI ID   WP_004974461.1    Uniprot ID   A0AAP4M279
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239511..250146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02190 (QSG83_02195) - 239858..240661 (+) 804 WP_317028612.1 putative RNA methyltransferase -
  QSG83_RS02195 (QSG83_02200) ponA 240731..243283 (-) 2553 WP_317028237.1 penicillin-binding protein PBP1a -
  QSG83_RS02200 (QSG83_02205) pilM 243453..244511 (+) 1059 WP_168418910.1 pilus assembly protein PilM Machinery gene
  QSG83_RS02205 (QSG83_02210) pilN 244511..245146 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  QSG83_RS02210 (QSG83_02215) comO 245143..245853 (+) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG83_RS02215 (QSG83_02220) pilP 245853..246377 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  QSG83_RS02220 (QSG83_02225) pilQ 246438..248573 (+) 2136 WP_317028613.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG83_RS02225 (QSG83_02230) aroK 248611..249153 (+) 543 WP_178319363.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23682.07 Da        Isoelectric Point: 6.4746

>NTDB_id=845077 QSG83_RS02205 WP_004974461.1 244511..245146(+) (pilN) [Acinetobacter towneri strain SAAt401]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLLVALAWFFYNAKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVSRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTPTESNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=845077 QSG83_RS02205 WP_004974461.1 244511..245146(+) (pilN) [Acinetobacter towneri strain SAAt401]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCGGCTGCTGTTGGGGTGTTATTGGTGGCTTTGGCGTGGTTCTTCTACAACGCGAAGTTACAAGATCAAGAACAAGCCA
ATCAATTGGTGATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTAGAAGGCTTGCAAGAACAGCGTAATGCA
ATTGTAGAGCGTATGAAGCTGATTCAGGGCTTACAAAGTCAGCGTCCAATTGCCGTGCGTTTGGTGGATGAATTGGTGCG
TGTGACACCAAGCAATATGTACTTAACCAAAGTGAGCCGTACAGGCAATAAATTCACTTTTGAAGGCAAGGCTGAAAGTC
CAAATACGGTGGCTGAATTCTTGCGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCC
AAAGAAGAAAATAAAGATAAAGCACCAAGCTCTGTGGTTCCTCGTGTAGAGGAAAGTTACGGTACTTTTGTAGTAACTTC
AGATTTAGAAGAAATTGCAATTCCAGTAACACCAACAGAATCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.283

100

0.706
  comN Acinetobacter baylyi ADP1

71.078

96.682

0.687