Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   QSG83_RS02210 Genome accession   NZ_CP127892
Coordinates   245143..245853 (+) Length   236 a.a.
NCBI ID   WP_104852651.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 240143..250853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02195 (QSG83_02200) ponA 240731..243283 (-) 2553 WP_317028237.1 penicillin-binding protein PBP1a -
  QSG83_RS02200 (QSG83_02205) pilM 243453..244511 (+) 1059 WP_168418910.1 pilus assembly protein PilM Machinery gene
  QSG83_RS02205 (QSG83_02210) pilN 244511..245146 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  QSG83_RS02210 (QSG83_02215) comO 245143..245853 (+) 711 WP_104852651.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG83_RS02215 (QSG83_02220) pilP 245853..246377 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  QSG83_RS02220 (QSG83_02225) pilQ 246438..248573 (+) 2136 WP_317028613.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG83_RS02225 (QSG83_02230) aroK 248611..249153 (+) 543 WP_178319363.1 shikimate kinase AroK -
  QSG83_RS02230 (QSG83_02235) aroB 249173..250252 (+) 1080 WP_317028238.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26575.09 Da        Isoelectric Point: 4.7532

>NTDB_id=845078 QSG83_RS02210 WP_104852651.1 245143..245853(+) (comO) [Acinetobacter towneri strain SAAt401]
MSLDEFDEVNQEAAVAPKKKMTVEKFFQQFNTLDPNNYGGWPLSVKITCWIFIIFLIAALGYFVVIKPKLDAIAAAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADTQTAANTAGGAQ

Nucleotide


Download         Length: 711 bp        

>NTDB_id=845078 QSG83_RS02210 WP_104852651.1 245143..245853(+) (comO) [Acinetobacter towneri strain SAAt401]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGAAGCTGCTGTTGCTCCGAAAAAGAAAATGACCGTTGAGAAGTTTTT
TCAGCAGTTTAATACCCTTGATCCAAATAACTACGGTGGTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTCATTA
TTTTCTTAATTGCGGCACTAGGCTATTTTGTCGTAATTAAGCCGAAGTTAGATGCCATTGCTGCAGCGCATGCACAAGAA
CAGAATTTATTAAACGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATATCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAATCAGCAGCTTGAGCAATTGCCGAAAGAAACTGAAATTCCAGGCTTGGTTGAAGACATCAACGTTA
CAGGTGTTAATTCAGGCTTGAAGTTTAAAAACATTCGCTTAGAGAATGAGATCAAACAAGAGTTCTTTATTGAGCAGCCA
ATTTCGATTGAAGCAACAGGTGACTATCACGCTTTTGGTTCATTTGTAAGTGGTACTGCAGCATTGCCGCGTATTGTGAC
CATGCATGATTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACAGATATTCCACAAGTGACATATAAAGCGCAAG
CGAAGACATATCGTTACGTGGGTAGTGCAGATACACAAACTGCGGCTAACACTGCTGGAGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.902

100

0.733
  pilO Acinetobacter baumannii D1279779

72.34

99.576

0.72