Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QSH61_RS04890 Genome accession   NZ_CP127855
Coordinates   1194720..1195937 (-) Length   405 a.a.
NCBI ID   WP_206471306.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. JC3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1189720..1200937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSH61_RS04870 (QSH61_04870) rlmM 1189751..1190836 (+) 1086 WP_206471302.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -
  QSH61_RS04875 (QSH61_04875) pilB 1191282..1192958 (-) 1677 WP_206471303.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSH61_RS04880 (QSH61_04880) coaE 1193068..1193697 (-) 630 WP_206471304.1 dephospho-CoA kinase -
  QSH61_RS04885 (QSH61_04885) pilD 1193707..1194585 (-) 879 WP_206471305.1 A24 family peptidase Machinery gene
  QSH61_RS04890 (QSH61_04890) pilC 1194720..1195937 (-) 1218 WP_206471306.1 type II secretion system F family protein Machinery gene
  QSH61_RS04895 (QSH61_04895) - 1195976..1196419 (-) 444 WP_206471307.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QSH61_RS04900 (QSH61_04900) nadC 1197089..1197931 (-) 843 WP_130126786.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QSH61_RS04905 (QSH61_04905) ampD 1199118..1199660 (+) 543 WP_010607337.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QSH61_RS04910 (QSH61_04910) ampE 1199667..1200518 (+) 852 WP_095727228.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44309.19 Da        Isoelectric Point: 9.8092

>NTDB_id=844792 QSH61_RS04890 WP_206471306.1 1194720..1195937(-) (pilC) [Pseudoalteromonas sp. JC3]
MSNKDHDTFIWSGVSNRGKKLNGEITGQSIALVKAQLRKQGITPSKVKRKPKPLFGFTGTKKIKSSDIATTTRQIATMLM
AGVSLVQTLEMLARGIKNKSLSKLISHIADEVKAGQPLAKSLRAYPRYFDELYCDLVHSGEQSGALDTIFDRIALYKEKT
EALKSKIKKALFYPIAVVAVALIVTGILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWVFVLGIGLFGYTYK
EMLIRSPAVKHFNDRMILRIPVIGEILKKAAVARYARTLSTTFAAGVPLGDALDSAAGASGNIIYKNAIKEIKAEVNSGN
QMHWAMHNTKVFPDMVVQMVSIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMVVLGVLIGGLIIAMYLPIFQ
LGSVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=844792 QSH61_RS04890 WP_206471306.1 1194720..1195937(-) (pilC) [Pseudoalteromonas sp. JC3]
ATGTCCAATAAAGATCATGACACATTTATCTGGTCAGGTGTCAGTAACCGAGGCAAAAAGCTAAACGGTGAAATAACTGG
CCAGAGTATAGCGCTTGTTAAAGCTCAGCTGCGGAAGCAGGGAATAACTCCTTCCAAAGTAAAACGAAAACCAAAACCTC
TATTTGGATTTACCGGCACTAAAAAGATCAAGTCCTCTGACATTGCTACAACGACTCGACAGATTGCTACTATGCTTATG
GCGGGAGTTTCTCTAGTACAAACCTTAGAGATGCTTGCCCGAGGCATAAAAAACAAAAGCCTATCAAAATTAATCAGTCA
TATTGCCGATGAAGTAAAAGCAGGCCAACCTCTCGCTAAATCTTTAAGAGCTTATCCTAGATATTTTGATGAACTCTACT
GTGACCTTGTCCATTCCGGGGAACAGTCTGGTGCACTTGATACCATATTTGACCGCATCGCGCTTTATAAGGAAAAAACT
GAAGCACTTAAGTCTAAGATTAAAAAGGCGCTATTCTACCCCATTGCTGTAGTGGCTGTAGCACTCATAGTTACTGGTAT
TTTGCTTATTTTCGTTGTACCTCAATTTCAAGATATCTTTGCAGGCTTTGGTGCTGAACTCCCCGCCTTTACGTTGATGG
TCATCGCGATTTCCGAATTTATGCAGGAATATTGGTGGGTATTTGTGCTTGGTATTGGCCTTTTTGGTTATACCTATAAA
GAAATGCTTATTCGCAGTCCTGCGGTAAAGCATTTTAACGACCGTATGATTTTACGTATTCCAGTGATTGGCGAGATCCT
GAAAAAAGCGGCGGTGGCGCGTTATGCTCGTACGCTTTCTACCACCTTTGCAGCGGGTGTTCCCCTTGGCGATGCACTAG
ATTCTGCCGCAGGTGCGTCGGGCAATATTATTTACAAAAACGCAATTAAAGAAATAAAAGCAGAGGTTAACTCGGGTAAC
CAAATGCACTGGGCAATGCATAACACCAAAGTATTCCCTGATATGGTGGTGCAAATGGTGTCTATTGGTGAAGAATCGGG
TTCTTTAGACGGTATGCTGGCAAAGGTCGCTAACATTTATGAGCAAGAAGTCGATGATGCGGTGGATGGCCTATCTAGCC
TATTAGAACCATTAATTATGGTGGTACTCGGCGTACTGATCGGTGGCCTGATTATCGCCATGTACTTACCGATATTCCAA
CTAGGTTCAGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.25

98.765

0.585
  pilC Legionella pneumophila strain ERS1305867

54.523

98.272

0.536
  pilC Acinetobacter baumannii D1279779

52.261

98.272

0.514
  pilC Acinetobacter baylyi ADP1

52.141

98.025

0.511
  pilC Vibrio campbellii strain DS40M4

43.596

100

0.437
  pilC Vibrio cholerae strain A1552

44.11

98.519

0.435
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427