Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QR692_RS11490 Genome accession   NZ_CP127854
Coordinates   2312743..2313237 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus petauri strain GB97     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2307743..2318237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR692_RS11460 (QR692_11460) - 2309362..2309622 (-) 261 WP_086583211.1 hypothetical protein -
  QR692_RS11465 (QR692_11465) - 2309625..2309942 (-) 318 WP_086583210.1 hypothetical protein -
  QR692_RS11470 (QR692_11470) - 2309914..2311149 (-) 1236 WP_086583209.1 hypothetical protein -
  QR692_RS11475 (QR692_11475) - 2311146..2311565 (-) 420 WP_143466339.1 hypothetical protein -
  QR692_RS11480 (QR692_11480) - 2311609..2311899 (-) 291 WP_086583207.1 WXG100 family type VII secretion target -
  QR692_RS11485 (QR692_11485) rpsR 2312378..2312623 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  QR692_RS11490 (QR692_11490) ssb 2312743..2313237 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  QR692_RS11495 (QR692_11495) rpsF 2313275..2313568 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  QR692_RS11500 (QR692_11500) - 2313754..2313966 (-) 213 WP_019291955.1 hypothetical protein -
  QR692_RS11505 (QR692_11505) - 2314433..2315896 (+) 1464 WP_019291956.1 amino acid permease -
  QR692_RS11510 (QR692_11510) dnaX 2315928..2317586 (-) 1659 WP_019291957.1 DNA polymerase III subunit gamma/tau -
  QR692_RS11515 (QR692_11515) - 2317599..2318219 (-) 621 WP_003133126.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=844779 QR692_RS11490 WP_017369521.1 2312743..2313237(-) (ssb) [Lactococcus petauri strain GB97]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=844779 QR692_RS11490 WP_017369521.1 2312743..2313237(-) (ssb) [Lactococcus petauri strain GB97]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372