Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VZG88_RS11075 Genome accession   NZ_CP143871
Coordinates   2199639..2200919 (-) Length   426 a.a.
NCBI ID   WP_208678283.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2194639..2205919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS11060 (VZG88_11060) ligA 2195382..2197421 (-) 2040 WP_338438045.1 NAD-dependent DNA ligase LigA -
  VZG88_RS11065 (VZG88_11065) hoxE 2197541..2198038 (+) 498 WP_208678285.1 bidirectional hydrogenase complex protein HoxE -
  VZG88_RS11070 (VZG88_11070) - 2198038..2199642 (+) 1605 WP_338438048.1 NuoF family protein -
  VZG88_RS11075 (VZG88_11075) cinA 2199639..2200919 (-) 1281 WP_208678283.1 competence/damage-inducible protein A Machinery gene
  VZG88_RS11080 (VZG88_11080) - 2200923..2202002 (-) 1080 WP_208678282.1 MraY family glycosyltransferase -
  VZG88_RS11085 (VZG88_11085) glyA 2202024..2203307 (-) 1284 WP_208678281.1 serine hydroxymethyltransferase -
  VZG88_RS11090 (VZG88_11090) dusB 2203495..2204505 (-) 1011 WP_208678280.1 tRNA dihydrouridine synthase DusB -
  VZG88_RS11095 (VZG88_11095) - 2204583..2204891 (+) 309 WP_011243540.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZG88_RS11100 (VZG88_11100) - 2204936..2205277 (+) 342 WP_011243539.1 carbon dioxide-concentrating mechanism protein CcmK -
  VZG88_RS11105 (VZG88_11105) - 2205389..2205760 (+) 372 WP_208678279.1 DUF1823 family protein -

Sequence

Protein


Download         Length: 426 a.a.        Molecular weight: 45491.61 Da        Isoelectric Point: 4.7812

>NTDB_id=844598 VZG88_RS11075 WP_208678283.1 2199639..2200919(-) (cinA) [Synechococcus elongatus IITB6]
MSDPRYCAEIISVGTELLLGNILNSNAQFLAEELAQLGIPHYFQTVVGDNRDRLQAAVKIAAERSGLLIFTGGLGPTPDD
LTTETLAACFDTPLAERPEVIADIEAKFARRGRVLTDNNRKQALLPVGAELLPNSSGTAPGMIWSPRSGLTLMTFPGVPA
EMRRMWAEAAVPWLHQNGWCRSILVSRLLRFWGISESALAEKVAPFFDLQNPTVAPYANNGEVKLRITAAATSEAEGQAL
IAPIEQELRAIAGRDCYGADSDSLASVVGEILRDRGQTLSVAESCTGGGLGQLITTIPGSSQWFWGGAIAYDNRVKQSLL
NVSAETLAESGAVSAAVAEQMAIGIQQRLGTTWGISITGIAGPDGGTATKPVGLVYIGIAGPSGCFSIERRWGAERGRDW
VRRLSTGDALDQLRRSLLTEDSSRLD

Nucleotide


Download         Length: 1281 bp        

>NTDB_id=844598 VZG88_RS11075 WP_208678283.1 2199639..2200919(-) (cinA) [Synechococcus elongatus IITB6]
ATGTCGGATCCCCGTTACTGCGCCGAGATTATCAGTGTCGGCACAGAGTTGCTGTTGGGCAACATCCTCAACAGTAATGC
TCAGTTTTTAGCCGAAGAGCTCGCACAACTGGGGATCCCTCACTACTTCCAAACGGTGGTGGGCGACAACCGCGATCGCT
TGCAGGCAGCGGTCAAAATTGCGGCCGAGCGATCGGGGCTGCTGATTTTCACGGGCGGTCTAGGGCCAACTCCAGATGAC
CTGACCACCGAGACTTTAGCCGCTTGTTTCGATACGCCCTTGGCCGAGCGTCCCGAGGTGATCGCTGATATTGAGGCTAA
GTTTGCGCGGCGCGGGCGGGTCTTGACCGATAACAACCGCAAGCAAGCCCTGTTACCTGTGGGGGCAGAACTGCTGCCCA
ATTCCAGCGGCACTGCGCCCGGCATGATCTGGTCACCGCGATCGGGCCTGACGCTGATGACATTCCCTGGTGTACCGGCA
GAAATGCGCCGGATGTGGGCGGAAGCAGCAGTCCCATGGCTCCATCAAAACGGTTGGTGTCGCTCAATCCTTGTCAGTCG
TTTGCTGCGATTTTGGGGCATTTCCGAGTCGGCTCTGGCCGAAAAGGTAGCGCCCTTTTTTGACCTTCAAAATCCAACGG
TTGCCCCCTACGCCAACAACGGCGAAGTGAAGCTGCGGATCACGGCTGCGGCGACTTCCGAAGCAGAGGGACAAGCCTTA
ATTGCTCCGATCGAGCAAGAATTGCGGGCGATCGCAGGCAGGGATTGCTACGGTGCCGACAGCGATAGCTTGGCCTCGGT
GGTGGGTGAGATTTTGCGCGATCGCGGTCAGACTTTGTCAGTCGCCGAATCTTGCACGGGTGGTGGCCTCGGTCAGCTGA
TCACCACTATTCCCGGCAGCTCTCAATGGTTTTGGGGTGGTGCGATCGCCTACGACAACCGCGTGAAACAATCACTCCTC
AACGTCTCGGCAGAAACCTTGGCTGAATCTGGTGCAGTCAGTGCAGCGGTTGCAGAGCAGATGGCGATCGGCATTCAACA
GCGCTTAGGGACGACCTGGGGCATCTCGATTACCGGCATTGCAGGACCGGATGGTGGCACAGCAACCAAGCCTGTCGGGT
TGGTCTATATCGGCATTGCAGGTCCATCAGGCTGCTTCAGCATCGAACGACGCTGGGGTGCGGAGCGTGGGCGAGACTGG
GTGCGGCGACTGAGCACAGGCGATGCACTCGATCAACTGCGGCGATCGCTGCTCACTGAAGACTCATCCCGGCTCGACTA
G

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-258)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-175)

Competence-damaged protein (CinA)

(262-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

40.421

100

0.406
  cinA Streptococcus pneumoniae Rx1

40.662

99.296

0.404
  cinA Streptococcus pneumoniae R6

40.662

99.296

0.404
  cinA Streptococcus pneumoniae R36A

40.662

99.296

0.404
  cinA Streptococcus pneumoniae D39

40.426

99.296

0.401
  cinA Streptococcus mitis NCTC 12261

40.189

99.296

0.399
  cinA Streptococcus mitis SK321

40.189

99.296

0.399
  cinA Bacillus subtilis subsp. subtilis str. 168

44.118

87.793

0.387
  cinA Streptococcus mutans UA159

37.143

98.592

0.366