Detailed information NTG0844540

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: VZH39_RS08235
• Genome accession: NZ_CP143862
• Coordinates: 1679022..1679744 (-)
• Length: 240 a.a.
• NCBI ID: WP_323368522.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB8
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1674022..1684744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZH39_RS08210 (VZH39_08210)	rpsB	1674595..1675350 (-)	756	WP_208675740.1	30S ribosomal protein S2	-
VZH39_RS08215 (VZH39_08215)	-	1675732..1676016 (+)	285	WP_208675738.1	DUF4278 domain-containing protein	-
VZH39_RS08220 (VZH39_08220)	-	1676114..1676800 (-)	687	WP_338429458.1	lecithin retinol acyltransferase family protein	-
VZH39_RS08225 (VZH39_08225)	-	1676824..1677666 (-)	843	WP_338429459.1	alpha/beta hydrolase	-
VZH39_RS08230 (VZH39_08230)	clpX	1677663..1679009 (-)	1347	WP_208675732.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
VZH39_RS08235 (VZH39_08235)	clpP	1679022..1679744 (-)	723	WP_323368522.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VZH39_RS08240 (VZH39_08240)	tig	1679836..1681260 (-)	1425	WP_338429460.1	trigger factor	-
VZH39_RS08245 (VZH39_08245)	-	1681528..1682454 (+)	927	WP_338429461.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	-
VZH39_RS08250 (VZH39_08250)	-	1682513..1683841 (+)	1329	WP_338429462.1	PhoH family protein	-
VZH39_RS08255 (VZH39_08255)	-	1683850..1684569 (+)	720	WP_208678640.1	LOG family protein	-

Sequence

Protein

• Length: 240 a.a.
• Molecular weight: 25932.49 Da
• Isoelectric Point: 4.6495

>NTDB_id=844540 VZH39_RS08235 WP_323368522.1 1679022..1679744(-) (clpP) [Synechococcus elongatus IITB8]
MFSSQASLPIHSRRLSAGLDSQWQQPQIQAIAGSQAIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVA
QLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAKGKRMALPSARIMIHQPL
GGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPQEAKAYGLIDQVLTRPTVAITDHNDAVLQ

Nucleotide

• Length: 723 bp

>NTDB_id=844540 VZH39_RS08235 WP_323368522.1 1679022..1679744(-) (clpP) [Synechococcus elongatus IITB8]
ATGTTTTCGTCCCAAGCTTCTCTGCCCATTCACAGTCGACGACTGAGCGCTGGTCTCGACAGCCAGTGGCAGCAGCCGCA
GATTCAAGCGATCGCAGGCTCCCAGGCTATTGTGCCGACGGTGGTGGAGCAATCAGGACGAGGCGAACGCGCTTTCGATA
TCTATTCCCGCCTATTGCGCGAACGGATTGTCTTCTTGGGGACAGGCGTTGATGATGCGGTTGCAGACTCGATCGTGGCG
CAGCTGCTTTTCCTCGAAGCCGAAGATCCCGAGAAAGATATTCAGCTCTACATCAACTCCCCCGGTGGTTCAGTGACCGC
TGGCATGGCGATCTACGACACGATGCAACAGGTCGCGCCAGATGTTGCCACCATCTGCTTTGGTTTGGCAGCCAGCATGG
GCGCTTTCTTGTTGTCGGGTGGAGCCAAAGGTAAGCGGATGGCTTTACCTAGCGCCCGTATCATGATCCACCAACCACTG
GGCGGCGCTCAGGGTCAAGCCGTGGATATTGAAATCCAAGCCCGTGAGATCCTGTACCACAAGAGCACGCTCAACGACCT
GTTAGCGCAGCATACGGGGCAGCCGCTTGAGAAGATTGAAGTCGATACCGATCGCGACTTCTTTATGTCGCCTCAGGAAG
CCAAGGCCTACGGATTAATTGATCAGGTACTTACACGACCAACCGTGGCCATCACCGACCATAATGATGCTGTTCTCCAG
TAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (47-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.783	78.75	0.542
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.254	78.75	0.538
clpP	Lactococcus lactis subsp. cremoris KW2	51.795	81.25	0.421
clpP	Streptococcus thermophilus LMG 18311	51.562	80	0.412
clpP	Streptococcus thermophilus LMD-9	51.562	80	0.412
clpP	Streptococcus pneumoniae D39	50.256	81.25	0.408
clpP	Streptococcus pneumoniae Rx1	50.256	81.25	0.408
clpP	Streptococcus pneumoniae R6	50.256	81.25	0.408
clpP	Streptococcus pneumoniae TIGR4	50.256	81.25	0.408
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.744	81.25	0.404
clpP	Streptococcus pyogenes JRS4	50	79.167	0.396
clpP	Streptococcus pyogenes MGAS315	50	79.167	0.396
clpP	Streptococcus mutans UA159	49.738	79.583	0.396