Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   VZH39_RS08230 Genome accession   NZ_CP143862
Coordinates   1677663..1679009 (-) Length   448 a.a.
NCBI ID   WP_208675732.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1672663..1684009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS08200 (VZH39_08200) - 1672844..1673743 (+) 900 WP_338429457.1 alpha/beta fold hydrolase -
  VZH39_RS08205 (VZH39_08205) tsf 1673827..1674492 (-) 666 WP_208678645.1 translation elongation factor Ts -
  VZH39_RS08210 (VZH39_08210) rpsB 1674595..1675350 (-) 756 WP_208675740.1 30S ribosomal protein S2 -
  VZH39_RS08215 (VZH39_08215) - 1675732..1676016 (+) 285 WP_208675738.1 DUF4278 domain-containing protein -
  VZH39_RS08220 (VZH39_08220) - 1676114..1676800 (-) 687 WP_338429458.1 lecithin retinol acyltransferase family protein -
  VZH39_RS08225 (VZH39_08225) - 1676824..1677666 (-) 843 WP_338429459.1 alpha/beta hydrolase -
  VZH39_RS08230 (VZH39_08230) clpX 1677663..1679009 (-) 1347 WP_208675732.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VZH39_RS08235 (VZH39_08235) clpP 1679022..1679744 (-) 723 WP_323368522.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VZH39_RS08240 (VZH39_08240) tig 1679836..1681260 (-) 1425 WP_338429460.1 trigger factor -
  VZH39_RS08245 (VZH39_08245) - 1681528..1682454 (+) 927 WP_338429461.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VZH39_RS08250 (VZH39_08250) - 1682513..1683841 (+) 1329 WP_338429462.1 PhoH family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49683.09 Da        Isoelectric Point: 5.6571

>NTDB_id=844539 VZH39_RS08230 WP_208675732.1 1677663..1679009(-) (clpX) [Synechococcus elongatus IITB8]
MSRYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVDLCNEILDEELFDGNANPAPPPGGVKPAAAAASHQGPRKPKRSL
TLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSNILLIGPTGCGKTLLAQTLAKL
LDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKML
EGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEETKTKEQRAAAILRHMEPEDLV
QFGLIPEFIGRMPVTAVLDPLDEVALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAIAREAFRRKTGARALRGIV
EEIMLEVMYELPSRQDVTHCTITREMVEKRSSADVLLHPSSLPTPESA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=844539 VZH39_RS08230 WP_208675732.1 1677663..1679009(-) (clpX) [Synechococcus elongatus IITB8]
ATGTCGAGATACGACTCTCACCTGAAGTGCTCTTTTTGCGGGAAATCCCAAGAGCAGGTACGTAAGCTCATCGCCGGACC
TGGAGTTTACATTTGTGATGAATGCGTCGACCTCTGTAACGAGATCCTCGACGAAGAATTATTTGACGGCAATGCCAATC
CTGCACCACCGCCAGGTGGCGTCAAACCCGCGGCTGCAGCTGCGAGTCATCAAGGACCTCGCAAACCGAAGCGATCGCTA
ACGCTGTCACAAATTCCCAAGCCCCACGACATCAAGCGCTATCTTGACCATCACGTCATTGGTCAAAATGAAGCCAAGAA
AATGTTGTCTGTGGCGGTTTATAACCACTACAAACGCTTGGCTTATCAGCAGTCAGCTGAAGAAGCAGGCGAAACAATTG
AAATTCAGAAATCCAATATTCTGCTGATTGGTCCAACCGGCTGTGGCAAGACTCTGCTTGCTCAGACGTTAGCCAAATTG
CTGGATGTCCCCTTCGCAGTTGCCGACGCAACAACACTGACGGAAGCCGGCTATGTCGGTGAAGACGTCGAAAACATTCT
GCTGCGGCTCCTGCAAGTAGCTGATCTCGACATCGAGGAAGCTCAACGCGGCATCATTTACATCGATGAAATCGACAAGA
TTGCGCGCAAGAGCGAAAATCCTTCGATCACGCGTGACGTCTCCGGGGAAGGCGTCCAGCAGGCTTTGCTGAAGATGCTG
GAAGGCACCATCGCCAATGTGCCGCCTCAGGGAGGTCGCAAACATCCCTATCAGGACTGCATCCAAATCGACACGCGCAA
CATCCTGTTTATCTGCGGTGGCGCCTTTGTCGGTCTGGAAAAACTCGTCGATCGCCGCTTGGGCAAAAAATCGATTGGCT
TTGTCCACCCTGAAGAGACCAAAACCAAGGAACAGCGGGCGGCTGCCATCCTGCGTCATATGGAACCCGAAGATTTGGTG
CAGTTTGGTCTGATTCCCGAATTTATCGGTCGGATGCCGGTGACGGCGGTGTTGGATCCGCTGGACGAAGTGGCGCTGAC
GGAAATCCTGACGGAACCTCGGGACGCGCTGGTCAAGCAGTATCAGAAGCTGATGCACATGGACAGCGTCGAGCTGGAAT
TCCGCCAAGATGCTATCGAAGCGATCGCCCGCGAAGCCTTCCGTCGCAAGACCGGAGCTCGGGCACTACGCGGCATCGTT
GAAGAGATCATGCTGGAAGTGATGTACGAGCTGCCGTCTCGCCAGGACGTCACTCACTGCACGATCACGCGGGAGATGGT
TGAGAAGCGCTCCAGTGCGGATGTGCTCTTGCATCCTTCGAGTTTGCCAACACCGGAATCCGCTTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(341-419)

AAA domain (Cdc48 subfamily) (AAA_2)

(136-334)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.84

94.643

0.538
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.804

95.536

0.504