Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP436_RS08540 Genome accession   NZ_CP127404
Coordinates   1921175..1922434 (+) Length   419 a.a.
NCBI ID   WP_205406026.1    Uniprot ID   A0AAW4GGS8
Organism   Stenotrophomonas sp. As-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1918184..1930087 1921175..1922434 within 0


Gene organization within MGE regions


Location: 1918184..1930087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP436_RS08525 - 1918184..1919080 (-) 897 WP_205406021.1 serine hydrolase domain-containing protein -
  QP436_RS08530 - 1919101..1920213 (-) 1113 WP_205406022.1 isoprenylcysteine carboxylmethyltransferase family protein -
  QP436_RS08535 comP 1920384..1920827 (-) 444 WP_100553383.1 pilin Machinery gene
  QP436_RS08540 pilC 1921175..1922434 (+) 1260 WP_205406026.1 type II secretion system F family protein Machinery gene
  QP436_RS08545 - 1922443..1923306 (+) 864 WP_089236602.1 A24 family peptidase -
  QP436_RS08550 coaE 1923318..1923929 (+) 612 WP_180165743.1 dephospho-CoA kinase -
  QP436_RS08555 - 1924029..1924415 (-) 387 WP_100553386.1 hypothetical protein -
  QP436_RS08560 - 1924980..1926350 (-) 1371 WP_100460170.1 HAMP domain-containing sensor histidine kinase -
  QP436_RS08565 - 1926313..1926990 (-) 678 WP_025874286.1 response regulator transcription factor -
  QP436_RS08570 - 1926999..1927472 (-) 474 WP_180165745.1 hypothetical protein -
  QP436_RS08575 - 1927562..1928038 (-) 477 WP_205406023.1 hypothetical protein -
  QP436_RS08580 rimK 1928292..1929170 (-) 879 WP_100553389.1 30S ribosomal protein S6--L-glutamate ligase -
  QP436_RS08585 - 1929265..1929507 (-) 243 WP_180165749.1 hypothetical protein -
  QP436_RS08590 - 1929707..1930087 (-) 381 WP_180165751.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45676.21 Da        Isoelectric Point: 10.1086

>NTDB_id=844073 QP436_RS08540 WP_205406026.1 1921175..1922434(+) (pilC) [Stenotrophomonas sp. As-6]
MSVSRSAIKKEPVARATIELQPFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGKAVGAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRTDIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIESLKGKIKKALFYPAMVVVVALLVSAIMLIFVVPQFEEVFSGFGAELPAFTQMIVNLSRFMVSWWWL
MAIVLVGTCVALVMSYKRSLKMQHTLDRLILKVPVIGQIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQQNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=844073 QP436_RS08540 WP_205406026.1 1921175..1922434(+) (pilC) [Stenotrophomonas sp. As-6]
ATGTCTGTCAGTCGCAGTGCGATCAAAAAGGAACCCGTGGCCCGCGCCACGATAGAGTTGCAACCGTTTGTCTGGGTCGG
GACGGACAAGCGTGGCGTGAAGATGAAGGGCGAGCAGTTGGCAAAGAACGCCAACCTGTTGCGCGCCGAGCTACGTCGAC
AGGGCATTAATCCGGGCCAGGTCAAACCCAAGCCAAAGCCGCTGTTCGGCGCAGCCGGTAAAGCCGTCGGCGCAAAGGAC
ATCGCCTTCTTCAGTCGGCAGATGGCGACGATGATGAAATCCGGCGTGCCGATCGTGTCCGCACTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTAGATGGCATCCGCACTGACATCGAAGGCGGCTCGTCGCTGTATGAGG
CAGTCAGCAAGCATCCTGTGCAGTTCGATGAGCTCTACCGCAATCTGGTTCGTGCTGGTGAGGGCGCGGGTGTTCTGGAA
ACCGTACTCGACACCGTTGCCACCTATAAAGAGAACATTGAATCCCTCAAGGGAAAGATCAAGAAGGCGCTGTTCTACCC
GGCGATGGTGGTAGTGGTGGCATTGCTTGTCAGCGCCATCATGCTGATCTTCGTGGTTCCGCAGTTCGAGGAAGTTTTCA
GTGGCTTTGGTGCGGAACTGCCGGCCTTCACCCAGATGATCGTCAACCTGTCCAGGTTCATGGTGTCTTGGTGGTGGCTG
ATGGCCATCGTTCTGGTCGGTACGTGCGTGGCCTTGGTCATGAGCTACAAACGCTCACTGAAAATGCAACACACGTTGGA
TCGACTGATCCTCAAGGTCCCGGTCATCGGCCAGATCATGAACAACAGCGCGATTGCCCGTTTTGCCCGGACCACAGCGG
TGACCTTCAAGGCCGGCGTGCCGTTGGTGGAAGCGCTGGGCATTGTCGCCGGCGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGCATGCGCGACGACGTATCAGTCGGCTACCCGGTCAACATGGCCATGAAGCAGCAGAATCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATGCCATGTTGTTCAAGGTTGCCGAGTATTATG
AGCAGGAAGTCAACAATGCAGTGGATGCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGCGTCGTCGTA
GGCGGTATGGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.463

96.897

0.508
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baumannii D1279779

50.882

94.749

0.482
  pilC Acinetobacter baylyi ADP1

49.261

96.897

0.477
  pilG Neisseria gonorrhoeae MS11

43.325

94.749

0.411
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

37.811

95.943

0.363