Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   QRA07_RS02620 Genome accession   NZ_CP127321
Coordinates   551435..552436 (+) Length   333 a.a.
NCBI ID   WP_233734041.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546435..557436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02590 (QRA07_02585) - 547991..548146 (-) 156 WP_014207816.1 hypothetical protein -
  QRA07_RS02595 (QRA07_02590) rpoZ 548185..548463 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  QRA07_RS02600 (QRA07_02595) gmk 548536..549165 (-) 630 WP_233734036.1 guanylate kinase -
  QRA07_RS02605 (QRA07_02600) ispH 549288..550238 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QRA07_RS02610 (QRA07_02605) fimU 550408..550881 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  QRA07_RS02615 (QRA07_02610) pilV 550875..551435 (+) 561 WP_233734037.1 type IV pilus modification protein PilV Machinery gene
  QRA07_RS02620 (QRA07_02615) pilW 551435..552436 (+) 1002 WP_233734041.1 PilW family protein Machinery gene
  QRA07_RS02625 (QRA07_02620) pilX 552433..553242 (+) 810 WP_017400486.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QRA07_RS02630 (QRA07_02625) pilY1 553254..557099 (+) 3846 WP_233734043.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35685.29 Da        Isoelectric Point: 6.3332

>NTDB_id=843397 QRA07_RS02620 WP_233734041.1 551435..552436(+) (pilW) [Acinetobacter pittii strain PC870]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGANTYIADTLLSRGAGDTVSAVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=843397 QRA07_RS02620 WP_233734041.1 551435..552436(+) (pilW) [Acinetobacter pittii strain PC870]
ATGGCTCACTCATTTGTATCATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGGCTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCGAA
TGTCGGAGCAAATACCTATATTGCTGACACATTACTTAGTCGTGGAGCAGGAGATACGGTGAGTGCTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCCGCTGTGCAAAGTGATCAGCTTACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGACCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAGGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85