Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QRX25_RS08250 Genome accession   NZ_CP127224
Coordinates   1621799..1623049 (+) Length   416 a.a.
NCBI ID   WP_115997260.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1616799..1628049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS08220 (QRX25_08215) - 1616893..1618179 (+) 1287 WP_065981482.1 pitrilysin family protein -
  QRX25_RS08225 (QRX25_08220) - 1618238..1618966 (+) 729 WP_212101670.1 SDR family oxidoreductase -
  QRX25_RS08230 (QRX25_08225) - 1619042..1619299 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  QRX25_RS08235 (QRX25_08230) - 1619428..1620219 (+) 792 WP_065521268.1 YmfK family protein -
  QRX25_RS08240 (QRX25_08235) - 1620238..1621125 (+) 888 WP_065981483.1 RodZ domain-containing protein -
  QRX25_RS08245 (QRX25_08240) pgsA 1621200..1621781 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRX25_RS08250 (QRX25_08245) cinA 1621799..1623049 (+) 1251 WP_115997260.1 competence/damage-inducible protein A Machinery gene
  QRX25_RS08255 (QRX25_08250) recA 1623221..1624264 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  QRX25_RS08260 (QRX25_08255) - 1624430..1625611 (+) 1182 WP_212101403.1 serine hydrolase domain-containing protein -
  QRX25_RS08265 (QRX25_08260) rny 1625902..1627461 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44975.22 Da        Isoelectric Point: 5.0599

>NTDB_id=842808 QRX25_RS08250 WP_115997260.1 1621799..1623049(+) (cinA) [Bacillus sp. L381]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGTNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERAGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=842808 QRX25_RS08250 WP_115997260.1 1621799..1623049(+) (cinA) [Bacillus sp. L381]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAATGTGTTTTATCATACCGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCTGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
CGCGAAAACAAAACGGACAATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAAGGCTCAGACGTTTTGGCGAATC
ACTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTACAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGCCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGAGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTAAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGAGTTGCGGGCCCCGATCCGCAGGAAGGGCATGCCCCGGGCCGCGTCT
TTATCGGTATTTCCGCGGAAGGGAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus suis isolate S10

40.153

93.99

0.377