Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QN079_RS00190 Genome accession   NZ_CP127160
Coordinates   37952..39190 (+) Length   412 a.a.
NCBI ID   WP_289230179.1    Uniprot ID   -
Organism   Enterococcus sp. FZMF     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32952..44190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN079_RS00170 (QN079_00170) - 33184..34452 (+) 1269 WP_086293487.1 pitrilysin family protein -
  QN079_RS00175 (QN079_00175) - 34445..35743 (+) 1299 WP_005226432.1 pitrilysin family protein -
  QN079_RS00180 (QN079_00180) - 36208..37110 (+) 903 WP_016608952.1 helix-turn-helix domain-containing protein -
  QN079_RS00185 (QN079_00185) pgsA 37243..37824 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QN079_RS00190 (QN079_00190) cinA 37952..39190 (+) 1239 WP_289230179.1 competence/damage-inducible protein A Machinery gene
  QN079_RS00195 (QN079_00195) recA 39293..40336 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  QN079_RS00200 (QN079_00200) rny 40580..42154 (+) 1575 WP_005232891.1 ribonuclease Y -
  QN079_RS00205 (QN079_00205) treR 42453..43169 (-) 717 WP_005226457.1 trehalose operon repressor -
  QN079_RS00210 (QN079_00210) pgmB 43224..43874 (-) 651 WP_289230180.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44761.86 Da        Isoelectric Point: 4.6402

>NTDB_id=842131 QN079_RS00190 WP_289230179.1 37952..39190(+) (cinA) [Enterococcus sp. FZMF]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQALVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLTNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKQLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVELLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=842131 QN079_RS00190 WP_289230179.1 37952..39190(+) (cinA) [Enterococcus sp. FZMF]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCAACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGCGTTAGTCAGAGATGAACCAGGGTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
GCGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAAGACGGTGTGTCTTTGACAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACAACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGAACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.591

100

0.519
  cinA Streptococcus pneumoniae D39

50.355

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.517
  cinA Streptococcus mitis SK321

49.882

100

0.512
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.507
  cinA Streptococcus mutans UA159

50

100

0.505
  cinA Bacillus subtilis subsp. subtilis str. 168

44.743

99.272

0.444
  cinA Streptococcus suis isolate S10

42.995

100

0.432