Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QPX86_RS18505 Genome accession   NZ_CP126972
Coordinates   4398171..4399439 (+) Length   422 a.a.
NCBI ID   WP_285163483.1    Uniprot ID   -
Organism   Shewanella goraebulensis strain DAU312     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4393171..4404439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX86_RS18490 nadC 4393915..4394793 (+) 879 WP_285163480.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QPX86_RS18495 - 4395844..4396266 (+) 423 WP_285163481.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QPX86_RS18500 pilB 4396383..4398095 (+) 1713 WP_285163482.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QPX86_RS18505 pilC 4398171..4399439 (+) 1269 WP_285163483.1 type II secretion system F family protein Machinery gene
  QPX86_RS18510 pilD 4399487..4400404 (+) 918 WP_407696605.1 prepilin peptidase Machinery gene
  QPX86_RS18515 coaE 4400406..4401011 (+) 606 WP_285163485.1 dephospho-CoA kinase -
  QPX86_RS18520 zapD 4401021..4401758 (+) 738 WP_285163486.1 cell division protein ZapD -
  QPX86_RS18525 yacG 4401799..4402008 (+) 210 WP_285163487.1 DNA gyrase inhibitor YacG -
  QPX86_RS18530 mutT 4402023..4402418 (+) 396 WP_285163488.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45870.15 Da        Isoelectric Point: 10.2855

>NTDB_id=840907 QPX86_RS18505 WP_285163483.1 4398171..4399439(+) (pilC) [Shewanella goraebulensis strain DAU312]
MATAARKPRTNTKTKKETKRQPKVFTFEWKGVNRDGQRTSGELRGSTIAEIRGILKAQGVTPKGVRKKSASLFKSEKKIT
AMDIAMITRQIATMLSAGVPLVTTIELLGRGHEKAKVRELLAGILTDVQSGIPLSDALRPNRLYFDDLYVDLVAAGEHSG
SLDAVFDRIATYKEKSEALKSKIKKAMFYPAAVVIVAIAVTVLLLLFVVPQFEEIFAGFGAELPAFTQFVLEISRALQSS
WYIIGIIIFASVFLFVRAHRNSQALRDKIDALILKIPAIGPILHKGAMARFARTLATTFSAGVPLIDGLESAAGASGNAV
YKKALLKVRQEVMSGMQMNVAMRTTGLFPDMLTQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVAMYLPIFQMGKVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=840907 QPX86_RS18505 WP_285163483.1 4398171..4399439(+) (pilC) [Shewanella goraebulensis strain DAU312]
ATGGCAACAGCAGCAAGAAAGCCAAGAACAAACACAAAAACAAAAAAAGAGACCAAGCGTCAGCCTAAGGTTTTTACTTT
TGAATGGAAAGGCGTCAATAGAGACGGTCAAAGAACTTCGGGTGAACTGAGGGGCTCTACCATTGCTGAAATCAGAGGCA
TTTTAAAAGCTCAAGGGGTCACTCCAAAAGGAGTTCGTAAAAAGTCAGCTTCTCTATTTAAGTCTGAGAAAAAAATCACC
GCAATGGATATTGCCATGATTACTCGACAGATTGCCACTATGCTTTCAGCTGGTGTCCCGTTAGTTACAACAATTGAACT
ATTAGGTAGAGGTCATGAAAAAGCAAAGGTTAGAGAACTGCTCGCAGGCATTCTAACGGATGTTCAATCAGGTATACCTT
TATCTGATGCCTTACGCCCCAATAGGCTGTATTTTGATGATTTATATGTGGATTTAGTTGCGGCAGGTGAACATTCTGGT
TCACTAGATGCTGTATTCGATCGTATTGCAACTTATAAAGAAAAGTCTGAAGCGCTTAAGTCAAAAATTAAAAAAGCAAT
GTTTTACCCAGCTGCTGTTGTAATTGTCGCGATTGCTGTAACCGTGTTGCTTTTACTTTTTGTTGTTCCTCAATTTGAAG
AAATTTTCGCAGGATTCGGCGCTGAATTACCTGCATTTACTCAGTTTGTTTTAGAAATTTCCAGAGCACTACAATCTTCT
TGGTATATTATTGGAATTATAATTTTTGCTTCAGTATTTCTTTTTGTAAGAGCCCACAGAAATTCTCAAGCCCTAAGAGA
TAAAATAGACGCTTTAATATTAAAAATCCCAGCTATTGGCCCTATATTACATAAAGGAGCTATGGCACGCTTTGCTCGTA
CATTAGCCACAACCTTTTCTGCTGGTGTACCACTCATTGATGGTCTTGAATCAGCTGCAGGTGCGTCAGGAAATGCTGTC
TACAAAAAAGCATTGTTGAAAGTTCGCCAAGAAGTGATGTCGGGTATGCAAATGAACGTCGCTATGCGTACAACTGGATT
ATTTCCCGACATGCTGACTCAAATGGTGATGATTGGCGAAGAATCCGGTGGTTTAGATGACATGCTCAACAAGGTTGCTA
ATATTTATGAAATGCAAGTAGATGATGCAGTTGATGGACTATCGAGTTTAATCGAGCCGATCATGATGGTGGTAATTGGT
ACATTAGTCGGCGGTTTGATTGTCGCTATGTATCTTCCTATTTTCCAAATGGGTAAAGTTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.43

93.602

0.509
  pilC Acinetobacter baumannii D1279779

50.754

94.313

0.479
  pilC Acinetobacter baylyi ADP1

49.51

96.682

0.479
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Vibrio cholerae strain A1552

47.75

94.787

0.453
  pilC Vibrio campbellii strain DS40M4

45.658

95.498

0.436
  pilG Neisseria meningitidis 44/76-A

42.289

95.261

0.403
  pilG Neisseria gonorrhoeae MS11

42.289

95.261

0.403