Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   VKP34_RS06740 Genome accession   NZ_CP142358
Coordinates   1312425..1313090 (-) Length   221 a.a.
NCBI ID   WP_136112242.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1307425..1318090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS06735 (VKP34_06735) hpf 1311797..1312345 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VKP34_RS06740 (VKP34_06740) comFC/cflB 1312425..1313090 (-) 666 WP_136112242.1 ComF family protein Machinery gene
  VKP34_RS06745 (VKP34_06745) comFA/cflA 1313062..1314387 (-) 1326 WP_136112241.1 DEAD/DEAH box helicase Machinery gene
  VKP34_RS06750 (VKP34_06750) - 1314442..1315074 (+) 633 WP_002988970.1 YigZ family protein -
  VKP34_RS06755 (VKP34_06755) cysK 1315202..1316143 (+) 942 WP_002991877.1 cysteine synthase A -
  VKP34_RS06760 (VKP34_06760) - 1316161..1316538 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  VKP34_RS06765 (VKP34_06765) - 1316538..1317938 (-) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25221.45 Da        Isoelectric Point: 9.3379

>NTDB_id=840906 VKP34_RS06740 WP_136112242.1 1312425..1313090(-) (comFC/cflB) [Streptococcus pyogenes strain 6702-99]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSLQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVEFADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=840906 VKP34_RS06740 WP_136112242.1 1312425..1313090(-) (comFC/cflB) [Streptococcus pyogenes strain 6702-99]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCCTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAATTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

40.724

100

0.407
  comFC/cflB Streptococcus mitis NCTC 12261

40.271

100

0.403