Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VR625_RS10645 Genome accession   NZ_CP142147
Coordinates   2318584..2319267 (-) Length   227 a.a.
NCBI ID   WP_030563669.1    Uniprot ID   A0A5N5EHC6
Organism   Streptomyces sp. DSS69     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313584..2324267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS10635 - 2315990..2317042 (+) 1053 WP_345982124.1 hypothetical protein -
  VR625_RS10640 clpX 2317128..2318426 (-) 1299 WP_109165692.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  VR625_RS10645 clpP 2318584..2319267 (-) 684 WP_030563669.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VR625_RS10650 - 2319347..2319952 (-) 606 WP_018511477.1 ATP-dependent Clp protease proteolytic subunit -
  VR625_RS10655 tig 2320251..2321630 (-) 1380 WP_158650497.1 trigger factor -
  VR625_RS10670 - 2322196..2322390 (-) 195 WP_109165690.1 hypothetical protein -
  VR625_RS10675 - 2322847..2323980 (+) 1134 WP_345982125.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24835.21 Da        Isoelectric Point: 4.7774

>NTDB_id=839939 VR625_RS10645 WP_030563669.1 2318584..2319267(-) (clpP) [Streptomyces sp. DSS69]
MVNTHMNNFPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEQMLARHSTTPLEKISEDIERDKILTAEDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=839939 VR625_RS10645 WP_030563669.1 2318584..2319267(-) (clpP) [Streptomyces sp. DSS69]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTCTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCCGTCCTGCTGGCCGCCGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGCGTCCTCATCCACCAGCCGTCCTCGCAGACGGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGTACGCAGCTGGAGCAGATGCTGGCCCGCCACTCGACGACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGTGACAAGATCCTCACGGCCGAGGACGCCCTGGCGTACGGGCTCGTCGACC
AGATCGTGTCCACCCGCAAGACGACCGCGGGCGCATCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N5EHC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37