Detailed information NTG0839938

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: VR625_RS10640
• Genome accession: NZ_CP142147
• Coordinates: 2317128..2318426 (-)
• Length: 432 a.a.
• NCBI ID: WP_109165692.1
• Uniprot ID: -
• Organism: Streptomyces sp. DSS69
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2312128..2323426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VR625_RS10630	-	2313231..2315852 (-)	2622	WP_345982123.1	valine--tRNA ligase	-
VR625_RS10635	-	2315990..2317042 (+)	1053	WP_345982124.1	hypothetical protein	-
VR625_RS10640	clpX	2317128..2318426 (-)	1299	WP_109165692.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
VR625_RS10645	clpP	2318584..2319267 (-)	684	WP_030563669.1	ATP-dependent Clp protease proteolytic subunit	Regulator
VR625_RS10650	-	2319347..2319952 (-)	606	WP_018511477.1	ATP-dependent Clp protease proteolytic subunit	-
VR625_RS10655	tig	2320251..2321630 (-)	1380	WP_158650497.1	trigger factor	-
VR625_RS10670	-	2322196..2322390 (-)	195	WP_109165690.1	hypothetical protein	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47452.31 Da
• Isoelectric Point: 4.8949

>NTDB_id=839938 VR625_RS10640 WP_109165692.1 2317128..2318426(-) (clpX) [Streptomyces sp. DSS69]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGANREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELEFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
PDVVRDHVNPTLVPREPRTIGKNDGGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=839938 VR625_RS10640 WP_109165692.1 2317128..2318426(-) (clpX) [Streptomyces sp. DSS69]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAAGAGCTTCCCAAGCCTCGTGAGATCTACGAGTTCCTGGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGAGAGAACGGCGGCGGAGCCAATCG
CGAGGACGCGATCGAGCTCGCCAAGTCGAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTCCTCGCGCAGA
CGCTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCGGACGCCACCGCGCTGACGGAGGCCGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCATCGATCACCCGTGATGTCTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTCCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCCGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCGGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCGCTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGAGTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCACGCGGTCTCC
GTGCCATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
CCGGACGTCGTCCGCGACCACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGCACGATCGGCAAGAACGACGGCGGCCG
CCACGAGAAGTCGGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.682	93.056	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.883	95.37	0.514