Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QPX65_RS13840 Genome accession   NZ_CP126698
Coordinates   2897826..2899610 (-) Length   594 a.a.
NCBI ID   WP_285454738.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892826..2904610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS13820 (QPX65_13820) - 2893528..2894355 (-) 828 WP_039554836.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QPX65_RS13825 (QPX65_13825) - 2894435..2895931 (-) 1497 WP_039554838.1 AAA family ATPase -
  QPX65_RS13830 (QPX65_13830) aroB 2895982..2897073 (-) 1092 WP_011079358.1 3-dehydroquinate synthase -
  QPX65_RS13835 (QPX65_13835) aroK 2897106..2897624 (-) 519 WP_011079357.1 shikimate kinase AroK -
  QPX65_RS13840 (QPX65_13840) pilQ 2897826..2899610 (-) 1785 WP_285454738.1 type IV pilus secretin PilQ family protein Machinery gene
  QPX65_RS13845 (QPX65_13845) pilP 2899624..2900136 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  QPX65_RS13850 (QPX65_13850) pilO 2900126..2900716 (-) 591 WP_043877335.1 type 4a pilus biogenesis protein PilO Machinery gene
  QPX65_RS13855 (QPX65_13855) pilN 2900709..2901299 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  QPX65_RS13860 (QPX65_13860) pilM 2901289..2902296 (-) 1008 WP_285454750.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 64532.68 Da        Isoelectric Point: 4.5291

>NTDB_id=839660 QPX65_RS13840 WP_285454738.1 2897826..2899610(-) (pilQ) [Vibrio vulnificus strain VV2018]
MICELMMKNKIQLFPGMLSQFVCLLSVCIFTTFANAQSEAENALKSIDFRTNAAKDAIIIVELATPATVVDLKPVAEGLS
IELINTSVKDEQLYLLDVKDFSTVVESIEVFREVSKTRLVANVSGEFRHDYRLSGRYLEVTISRIKSEQEAREQSVLEKE
GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVTGNVTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPQDELDLR
EKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESVSMLSDRGSVAIDERTNSLLLRELPENIEVIREIINSLD
IPVKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGIGSGDSGSGGSGSEGGSASIDDF
LNVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVSF
KKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPL
LGDLPLLGALFRRSYENVGKRELLIFVTPKVILQ

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=839660 QPX65_RS13840 WP_285454738.1 2897826..2899610(-) (pilQ) [Vibrio vulnificus strain VV2018]
GTGATTTGTGAGTTGATGATGAAAAACAAAATCCAATTGTTTCCGGGAATGCTTTCCCAATTCGTCTGCCTGTTGTCTGT
TTGCATCTTTACCACCTTTGCAAACGCACAATCTGAAGCAGAAAATGCGCTCAAGAGCATCGATTTCAGAACCAACGCTG
CCAAAGATGCGATTATCATCGTTGAATTGGCAACGCCTGCAACGGTGGTGGATTTGAAACCGGTAGCGGAAGGATTGAGC
ATCGAGTTGATCAATACCTCGGTCAAAGATGAGCAGCTCTATCTGCTCGATGTCAAAGATTTCTCGACCGTGGTTGAAAG
TATCGAAGTGTTCAGAGAAGTGTCCAAAACCCGTCTTGTTGCGAATGTTAGTGGTGAATTTCGTCACGACTATCGTCTTT
CTGGACGCTATCTCGAGGTGACAATTTCTCGCATCAAATCGGAGCAAGAAGCCCGTGAACAAAGTGTGTTGGAAAAAGAA
GGCAAGTTGATTTCTATCAACTTCCAAGATATTCCAGTGCGTAACGTTTTGCAGCTTATCGCAGACTACAATGGCTTCAA
CCTCGTGGTATCTGATTCCGTGACTGGTAATGTGACGTTGAGATTGGATGGGGTACCTTGGCAGCAAGTGCTCGATATCA
TTCTTCAAGTGAAAGGTTTAGATAAACGTGTTGAAGGTAATGTTGTGCTCATCGCTCCTCAAGATGAATTGGATTTGCGA
GAGAAGCAGCAGCTTGAGAAAGAACGTCTGGCGGAAGAGCTTGGCTCCCTCAAATCGGAAATCATCAAAGTCAACTTTGC
CAAAGCGTCAGACATCGCTGAGATGATCAATGGCAAAGAGTCGGTTAGCATGCTGTCAGATCGTGGTAGTGTGGCGATTG
ATGAACGGACAAACTCTCTTTTGTTGCGTGAGTTACCCGAAAACATCGAAGTGATTCGAGAAATTATCAATTCGTTGGAT
ATCCCAGTTAAACAGGTACAAATTGAAGCGCGAATTGTCACGGTGAACGAAGGCAATCTTGATGAGCTTGGTGTACGTTG
GGGTTTCACCTCCATCAACGGCAGCACAACTGTCGGTGGTTCAATCGAAAACAACCTTGCAACCATTGGTCTCTACAATG
CAGGCAGTGGTATTGGCAGTGGTGACTCAGGTAGCGGCGGCAGTGGTAGTGAAGGCGGTTCGGCCTCCATTGATGATTTC
CTCAATGTTAATCTTGCTGCGACCTCTGCAAACGCCTCAAGTATTGCTTTCCAAGTGGCTAAATTGGGGTCGGATTTGTT
GTTGGATCTCGAACTCTCTGCACTGCAACGCGAATCAAAAGCGGAAATTATTTCTAGCCCTCGTTTGATCACAACCAATA
AGAAGCCCGCTTATATCGAGCAAGGTACGGAGATCCCTTATCTAGAGTCTTCCTCCAGTGGAGCGACCACGGTTTCATTT
AAGAAAGCCGTGCTTAGCCTGAAAGTGACCCCACAGATCACGCCTGACAATCGTCTCGTGTTGGATTTAAGCGTTACACA
AGATAGACCCGGCGAAATTGTCAAAACAGGCACTGGAGAAGCGGTTGCGATTGATACTCAGCGCATCGGTACACAAGTCT
TGGTCAATAATGGTGAAACGGTAGTGTTAGGCGGTATCTTCCAACACAGCATTACCAATACCACGGACAAGGTTCCTCTG
TTAGGCGATTTACCTTTATTGGGGGCGCTTTTCCGCCGTAGCTATGAAAACGTGGGTAAACGTGAATTGCTGATATTTGT
TACACCTAAGGTTATCTTGCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(434-592)

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II/III secretion system short domain (Secretin_N)

(260-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

78.136

99.327

0.776
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

73.559

99.327

0.731
  pilQ Vibrio cholerae strain A1552

73.559

99.327

0.731
  pilQ Legionella pneumophila strain Lp02

41.607

94.276

0.392
  pilQ Legionella pneumophila strain ERS1305867

41.607

94.276

0.392
  pilQ Pseudomonas aeruginosa PAK

39.823

95.118

0.379
  comQ Acinetobacter baylyi ADP1

36.993

99.663

0.369