Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QPX65_RS13850 Genome accession   NZ_CP126698
Coordinates   2900126..2900716 (-) Length   196 a.a.
NCBI ID   WP_043877335.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2895126..2905716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS13830 (QPX65_13830) aroB 2895982..2897073 (-) 1092 WP_011079358.1 3-dehydroquinate synthase -
  QPX65_RS13835 (QPX65_13835) aroK 2897106..2897624 (-) 519 WP_011079357.1 shikimate kinase AroK -
  QPX65_RS13840 (QPX65_13840) pilQ 2897826..2899610 (-) 1785 WP_285454738.1 type IV pilus secretin PilQ family protein Machinery gene
  QPX65_RS13845 (QPX65_13845) pilP 2899624..2900136 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  QPX65_RS13850 (QPX65_13850) pilO 2900126..2900716 (-) 591 WP_043877335.1 type 4a pilus biogenesis protein PilO Machinery gene
  QPX65_RS13855 (QPX65_13855) pilN 2900709..2901299 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  QPX65_RS13860 (QPX65_13860) pilM 2901289..2902296 (-) 1008 WP_285454750.1 type IV pilus assembly protein PilM Machinery gene
  QPX65_RS13865 (QPX65_13865) - 2902436..2904949 (+) 2514 WP_103199827.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22719.22 Da        Isoelectric Point: 5.0836

>NTDB_id=839662 QPX65_RS13850 WP_043877335.1 2900126..2900716(-) (pilO) [Vibrio vulnificus strain VV2018]
MASWQDLDIDEITDWPILPQAAVVVLLMLIIQGFGYWFYLKPETEVLQRMVAEEQTLKISARIKATKVAALPQLQSQLDE
LTQRYEFLLKQLPVQKELATMLASVNELGIQSKLTFTRIDWGEKQTKDFLYQLPLNIELTGDYHDIGEFSEAIARLPRII
SFTDVTWHRVSMESSTLHFRVKANTYQFKSEAVHEK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=839662 QPX65_RS13850 WP_043877335.1 2900126..2900716(-) (pilO) [Vibrio vulnificus strain VV2018]
ATGGCTAGTTGGCAAGATCTCGATATTGATGAAATCACAGATTGGCCGATTTTACCGCAGGCGGCGGTTGTCGTGTTGCT
GATGTTGATCATTCAAGGTTTTGGTTATTGGTTCTATCTCAAGCCGGAAACGGAAGTGTTGCAAAGGATGGTCGCAGAAG
AGCAAACGCTGAAAATCTCGGCTCGAATTAAGGCGACCAAAGTGGCTGCCTTGCCGCAACTTCAATCGCAACTTGATGAA
CTGACTCAGCGCTATGAATTCTTACTTAAGCAACTGCCCGTGCAGAAGGAGTTGGCGACGATGTTGGCGTCGGTCAATGA
ACTCGGCATTCAAAGTAAGCTCACGTTTACACGTATCGATTGGGGGGAAAAGCAAACCAAGGATTTCCTTTACCAACTGC
CTTTGAATATTGAGTTAACCGGGGATTATCACGATATCGGTGAATTTTCTGAAGCGATTGCCCGCTTGCCTCGCATTATC
AGTTTTACCGATGTGACTTGGCATCGAGTGAGTATGGAAAGCAGCACCTTGCACTTCCGAGTAAAAGCGAACACCTATCA
GTTCAAGTCGGAGGCTGTCCATGAGAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

73.016

96.429

0.704
  pilO Vibrio cholerae strain A1552

67.347

100

0.673