Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QPX65_RS13860 Genome accession   NZ_CP126698
Coordinates   2901289..2902296 (-) Length   335 a.a.
NCBI ID   WP_285454750.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896289..2907296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS13835 (QPX65_13835) aroK 2897106..2897624 (-) 519 WP_011079357.1 shikimate kinase AroK -
  QPX65_RS13840 (QPX65_13840) pilQ 2897826..2899610 (-) 1785 WP_285454738.1 type IV pilus secretin PilQ family protein Machinery gene
  QPX65_RS13845 (QPX65_13845) pilP 2899624..2900136 (-) 513 WP_011079355.1 pilus assembly protein PilP Machinery gene
  QPX65_RS13850 (QPX65_13850) pilO 2900126..2900716 (-) 591 WP_043877335.1 type 4a pilus biogenesis protein PilO Machinery gene
  QPX65_RS13855 (QPX65_13855) pilN 2900709..2901299 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  QPX65_RS13860 (QPX65_13860) pilM 2901289..2902296 (-) 1008 WP_285454750.1 type IV pilus assembly protein PilM Machinery gene
  QPX65_RS13865 (QPX65_13865) - 2902436..2904949 (+) 2514 WP_103199827.1 PBP1A family penicillin-binding protein -
  QPX65_RS13870 (QPX65_13870) oxyR 2905020..2905919 (-) 900 WP_237287962.1 DNA-binding transcriptional regulator OxyR -
  QPX65_RS13875 (QPX65_13875) - 2906193..2906465 (+) 273 WP_237287963.1 DUF3624 domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37638.00 Da        Isoelectric Point: 6.3873

>NTDB_id=839664 QPX65_RS13860 WP_285454750.1 2901289..2902296(-) (pilM) [Vibrio vulnificus strain VV2018]
MGKPFVTGIDIGHRSLKAVILKPYGEHYALLGYKEIIIKDGIFSDNHTLNHQEIVNSLKELKKELPLFRYQVSLAVPDSS
VISKMLSIDAELDGREREFAILQAFAHQSPFPVDELSIDYVQLVEETSKTNHSYQVYATKKEVVESRVRVAEEVGLKPVL
VDVHAHSLCNILTLAAERHPDKASYCLLDVGYDTTSLVMSRRNEPPLVKEFAYGVSHLNASIGDDPTSPDAHEKTDIFNK
ELTERVRRQLQLFQSMDSQSKVNGLWICGEGAITPLLSETLQRKLSLECEVLNPLALFEQKTAKRKRRIVDWHHFSVAAG
LAIGGIQWLEDSHAA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=839664 QPX65_RS13860 WP_285454750.1 2901289..2902296(-) (pilM) [Vibrio vulnificus strain VV2018]
ATGGGTAAGCCGTTCGTTACCGGAATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCTTATGGAGAGCA
CTACGCCCTGTTAGGGTACAAAGAAATAATCATTAAAGACGGTATTTTCTCAGATAACCACACTCTGAATCATCAAGAAA
TTGTCAATAGCCTGAAAGAACTGAAGAAGGAACTGCCTCTTTTCCGTTATCAGGTGTCATTGGCGGTGCCTGATAGTTCA
GTGATTAGTAAGATGTTATCGATCGATGCGGAGTTGGATGGTCGAGAGCGAGAATTCGCTATCCTTCAGGCGTTTGCACA
TCAGTCGCCATTTCCTGTCGATGAATTATCGATTGATTATGTCCAATTGGTCGAAGAAACCAGCAAAACGAATCATAGCT
ATCAAGTTTACGCCACCAAAAAAGAGGTGGTGGAAAGCCGTGTGCGTGTCGCAGAAGAAGTGGGACTGAAACCTGTGCTG
GTAGATGTGCATGCGCATAGCCTGTGCAACATCTTAACGTTAGCGGCAGAGCGCCATCCAGATAAAGCCAGCTATTGCTT
GTTGGATGTGGGTTATGACACCACCTCTTTGGTGATGTCGCGTCGCAACGAACCGCCTTTAGTTAAAGAATTTGCCTATG
GGGTGTCTCACCTCAATGCGTCGATAGGCGACGATCCGACTTCTCCTGATGCTCATGAGAAAACCGACATCTTTAATAAA
GAGCTGACAGAGCGAGTTCGTCGGCAATTGCAGTTGTTCCAATCTATGGATAGCCAAAGCAAAGTGAATGGCCTCTGGAT
CTGCGGTGAAGGCGCGATTACTCCGTTGTTGAGTGAAACGTTGCAGAGAAAGCTGAGTTTGGAGTGTGAAGTCCTTAATC
CTCTGGCTCTGTTTGAGCAAAAAACGGCGAAAAGAAAGCGCCGTATTGTTGATTGGCACCATTTTTCGGTGGCTGCGGGA
TTAGCGATTGGTGGCATTCAGTGGCTGGAGGATAGCCATGCAGCATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

53.433

100

0.534
  pilM Vibrio cholerae strain A1552

48.68

100

0.496